Locus 4741

Sequence ID 2R_DroMel_CAF1
Location 15,567,165 – 15,567,269
Length 104
Max. P 0.875252
window7629

overview

Window 9

Location 15,567,165 – 15,567,269
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.62
Mean single sequence MFE -37.83
Consensus MFE -21.11
Energy contribution -22.03
Covariance contribution 0.92
Combinations/Pair 1.13
Mean z-score -3.00
Structure conservation index 0.56
SVM decision value 0.89
SVM RNA-class probability 0.875252
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15567165 104 + 20766785
CA-CCCACCUGGUAGCCGGGUGGACAGCCAUUAUCCUUUGGCAACAAAAAGCGUGGCUAAAUGC-C-CGCUGCCGGCUCAGCCAGCUAAGACAAAUGUCACGUGGUC
..-.(((((((((((((((.......((((........)))).......((((.(((.....))-)-)))).))))))..)))))....(((....)))..)))).. ( -43.20)
>DroSim_CAF1 340580 104 + 1
CA-CCCACCUGGUAGCCGGGUGGACAGCCAUUAUCCUUUGGCAACAAAAAGCGUGGCUAAAUGU-C-CGCUGCCGGCUCAGCCAGCUAAGACAAAUGUCACGUGGUC
..-.(((((((((((((((((((((((((((.....((((....))))....)))))....)))-)-)))..))))))..)))))....(((....)))..)))).. ( -45.20)
>DroEre_CAF1 348546 105 + 1
CA-CCCACCUGGUAGCCGGGUGGACAGCCAUUAUCCUUUGGCAACAAAAAGCGUGGCUAAACGGCC-CGCUGCCUUCCGAGCCAGCUAAGACAAAUGUCACGUGGUA
..-.((((((((...))))))))...(((((.....((((....)))).(((.(((((....(((.-....))).....))))))))..(((....)))..))))). ( -39.00)
>DroYak_CAF1 360074 106 + 1
CA-CCCACCUGGUAGCCGGGUGGACAACCAUUAUCCUUUGGCAACAAAAAGCGUGGCUAAAUGGCCACGCUGCCGGCCGAGCCAGCUAAGACAAAUGUCACGUGUUC
..-..((((((((.(((((((((....)))).....((((....)))).(((((((((....))))))))).)))))...)))))....(((....)))..)))... ( -42.90)
>DroMoj_CAF1 561375 87 + 1
CA-CCCACCUGGCAGCCCAUU----AUCCAUUAUCCUUUGGCAACAAGAAGCGUGGCUAA-UG----CGUUGCC---------AGCU-AGACAAAUGUCGCAUGUAC
..-.....((((((((.((((----(.((((.....((((....))))....)))).)))-))----.))))))---------))..-.(((....)))........ ( -28.70)
>DroAna_CAF1 335731 98 + 1
CAUCCCACCUGGUAGCCGCCGAGGAAGCCAUUAUCCUGCGACAACAAAAAGCGUGGCUAAAGGA-G-CUCUGCCU-------UGGCCAAGACAAAUGUCACGUGGUC
....((((.........(((((((.(((.....((((((.((..........)).))...))))-)-))...)))-------))))...(((....)))..)))).. ( -28.00)
>consensus
CA_CCCACCUGGUAGCCGGGUGGACAGCCAUUAUCCUUUGGCAACAAAAAGCGUGGCUAAAUGG_C_CGCUGCCGGC__AGCCAGCUAAGACAAAUGUCACGUGGUC
....((((..((((((.........((((((.....((((....))))....))))))..........))))))...............(((....)))..)))).. (-21.11 = -22.03 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:14 2006