Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,674,633 – 2,674,740 |
Length | 107 |
Max. P | 0.691741 |
Location | 2,674,633 – 2,674,740 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -7.83 |
Energy contribution | -8.62 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.38 |
Mean z-score | -2.88 |
Structure conservation index | 0.28 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2674633 107 + 20766785 GCCAAAGUCGGAUUCCGAUUCCGAUUCGGAUUCGGAUUCGGAUUCGGAUUCGUAUUCGCAUU----CGGACAUCU----GACCGACCAUUUGUAUAAUUGGCAUCUCUAAUUUUU (((((.((((((((((((...(((..(((((((((((....)))))))))))...)))...)----)))).))))----)))(((....))).....)))))............. ( -37.30) >DroPse_CAF1 121095 94 + 1 -CUAAACUCGAUGUCCGAUUCCGACUUGGAU------------UCGGACUCGGACUCGGACU----CGGACGUCUGUCUGA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU -......((((.((((((.(((((.......------------))))).))))))))))..(----(((((....))))))----(((..........))).............. ( -27.80) >DroSec_CAF1 107548 85 + 1 GCCAAAGUCGGAUUCCGAUUCCGAUUCG------------------GAUUCGUAUUCGCAUU----CGGACGUCU----GA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU (((((.((((((((((((...(((..((------------------....))...)))...)----)))).))))----))----)(....).....)))))............. ( -23.90) >DroSim_CAF1 105782 91 + 1 GCCAAAGUCGGAUUCCGAUUCCGAUUCGGAU------------UCGGAUUCGUAUUCGCAUU----CGGACGUCU----GA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU (((((.((((((((((((...(((..(((((------------....)))))...)))...)----)))).))))----))----)(....).....)))))............. ( -27.10) >DroWil_CAF1 138280 99 + 1 GCGGGAUUGGGAUUUGGAUUUAGAUUCGGAU------------UCGGAUUCGGAUGCGGACUUGGUUGGACGUCUGUCUGA----CUAUUUAUAUAAUUGGCAUCUCUAAUUUUU ...(((((.((((((((((....))))))))------------)).)))))((((((.((..((((..(((....)))..)----))).........)).))))))......... ( -29.70) >DroYak_CAF1 103746 85 + 1 GCCUAAGUCGGAUUCCGAUUCUGAUUCGU------------------AUUCGGAUUCGCAUU----CGGACGUCU----GA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU (((...((((((((((((..(.((((((.------------------...)))))).)...)----)))).))))----))----)(....).......)))............. ( -22.40) >consensus GCCAAAGUCGGAUUCCGAUUCCGAUUCGGAU____________UCGGAUUCGGAUUCGCAUU____CGGACGUCU____GA____CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU ((((((((((((.......))))))).........................................((...((.....))....))..........)))))............. ( -7.83 = -8.62 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:28 2006