Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,551,531 – 15,551,630 |
Length | 99 |
Max. P | 0.581832 |
Location | 15,551,531 – 15,551,630 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 84.85 |
Mean single sequence MFE | -19.91 |
Consensus MFE | -14.89 |
Energy contribution | -15.75 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.05 |
Mean z-score | -2.05 |
Structure conservation index | 0.75 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15551531 99 + 20766785 CUUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCACAUCUCCACCCCGCCAC---------ACUAAGCCAUACCACCAAA-AACCCGGCGGAAUUCCUUAGAAGAG ((((((....((((.((((((.((....)).)))))).............((...---------.....))............-....))))((....))...)))))) ( -17.40) >DroSec_CAF1 345260 99 + 1 CUUUUCACUUGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCAC---------ACUAAGCCAUACCACCAAA-AACCCGGCGGAAUUCCUUAGAAGAG ((((((.......((((((((.((....)).)))))))).........(((((..---------...................-.....))))).........)))))) ( -22.57) >DroSim_CAF1 325115 99 + 1 CUUUUCACUCACCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCAC---------ACUAAGCCAUACCACCAAA-AACCCGGCGGAAUUCCUUAGAAGAG ((((((.......((((((((.((....)).)))))))).........(((((..---------...................-.....))))).........)))))) ( -22.57) >DroEre_CAF1 333194 96 + 1 CUUUUCACCCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCCUCUCC-CCCCGCCCC----------UCAAGCCAUUCCCCCAA--AACCCGGCCGAAUUCCUUAGAAGAG ((((((.......((((((((.((....)).))))))))......-.........----------..(((..((((..((..--.....))..))))..))).)))))) ( -17.50) >DroYak_CAF1 344510 101 + 1 CUUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCCCC--------ACUAAGCCAUUCCCCCAAAAAACCAGGCGGAAUUCCUUAGAAGAG .......(((...((((((((.((....)).)))))))).................--------.(((((..(((((.((.........)).)))))..)))))..))) ( -24.20) >DroAna_CAF1 320510 99 + 1 CCUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUGUCUGCCCCACCACCACCCUCCGAAUAAGCCAUCU----------CCGGACGAAAUUCCUUAGAAAAG ..((((.......((((((((.((....)).))))))))...................(.((((............----------.)))).)..........)))).. ( -15.22) >consensus CUUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCAC_________ACUAAGCCAUACCACCAAA_AACCCGGCGGAAUUCCUUAGAAGAG ((((((.......((((((((..........)))))))).........(((((....................................))))).........)))))) (-14.89 = -15.75 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:09 2006