| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,543,164 – 15,543,254 |
| Length | 90 |
| Max. P | 0.572607 |
| Location | 15,543,164 – 15,543,254 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 78.76 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15543164 90 - 20766785 -GCAGCAGCAGCAACGAAGGAGGCAGCAACACACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA -......((.((..(....)..)).))..(((((((((((..((((.....(((((.......)))))..))))...)))))))))))... ( -24.50) >DroVir_CAF1 459051 76 - 1 -ACAACAGC---AAC---------AAACA--CACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA -........---...---------...((--(((((((((..((((.....(((((.......)))))..))))...)))))))))))... ( -18.40) >DroEre_CAF1 325183 85 - 1 ------AACACCACCGAAGGAGGCCGCAACACACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA ------..((((((........((((((...((..(((..(((((.....)))))..)))..))..)))).))........))).)))... ( -20.79) >DroWil_CAF1 624399 73 - 1 -GUAGCAGC---------------AGCAA--CACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA -...((...---------------.)).(--(((((((((..((((.....(((((.......)))))..))))...)))))))))).... ( -16.40) >DroAna_CAF1 312461 83 - 1 ------AACAGGCCAGUCCAGGCCAGCAAC--ACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA ------....((((......))))....((--((((((((..((((.....(((((.......)))))..))))...)))))))))).... ( -23.20) >DroPer_CAF1 339263 86 - 1 CGAGGCCGCACCAUCGGGAG---GAGCAG--CACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA ....(((((((..((....)---)..(((--(.((.....(((((.....)))))...)))))).))))).)).................. ( -21.60) >consensus _G_AGCAGCA_CAACG___G___CAGCAA__CACAUAAUUAGUGUAAUUAACGCUUUUUGGCUGAGUGCGUGCAGAAAAUUGUGUGUGAAA ...............................(((((((((..((((.....(((((.......)))))..))))...)))))))))..... (-12.57 = -12.73 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:04 2006