Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,520,366 – 15,520,458 |
Length | 92 |
Max. P | 0.520930 |
Location | 15,520,366 – 15,520,458 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 72.56 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -3.00 |
Energy contribution | -4.24 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.15 |
Mean z-score | -1.48 |
Structure conservation index | 0.14 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15520366 92 + 20766785 --GUUGAUGUUUGGUACACUGGGAAGGAUAUCUUAUCUACUUGUGUCUAGCUUAGAU-UUUUGCAAGUUUCAGCUAG----UUAAGCCAUA--CAUAAA-UG --(((.((((.((((((((.((...(((((...))))).)).))))((((((.((((-((....)))))).))))))----....)))).)--))).))-). ( -23.50) >DroSec_CAF1 314231 99 + 1 AUGUUGAUGUUUGGUGCACUGAGAAGGAUAUCCUAUCUACUUGUAUCUCGCUUAGUGUUUUUGAAAGUCAAUGCAAGGAUAUUAAACCAUA--CAUAAA-GG ..((((((.((..(.((((((((..((((((...........))))))..))))))))..)..)).))))))....((........))...--......-.. ( -23.40) >DroSim_CAF1 294131 96 + 1 AUGUUGAUGUUUGGUACACUGAAAAGGAUAUCUUAUCUACUUGUAUCUAGCUAAGAGU---UGAAAGUCAAGGCUAGGAUAUUAAGCCAUA--CAUGAA-GA ...((.((((.((((...((....))(((((((((....((((....((((.....))---)).....))))..)))))))))..)))).)--))).))-.. ( -22.30) >DroEre_CAF1 302953 88 + 1 AUGCUGAUGUUUGGUACACUGAGAG-GAUA-----UCUACUUA-GGCUAGCUUAAUGU----UAAAGUCA-AGUAAGGAUAGGAAGCCAUA--CAUAAGAAG ...((.((((.((((...((....)-).((-----(((((((.-(((((((.....))----)..)))))-)))..)))))....)))).)--))).))... ( -19.80) >DroYak_CAF1 311916 96 + 1 AUGUUGAUGUUUGAUACACUGAGAGGGAUA-----UCUACUUGUAGCUGGCCUAAAGU-GUAUAAAGUCAAAGUAAGGAGAUGAAGCCAUAUACAUAUGUAC ...(((((.....(((((((...(((..((-----.(((....))).)).)))..)))-))))...))))).(((.((........)).))).......... ( -18.40) >consensus AUGUUGAUGUUUGGUACACUGAGAAGGAUAUC_UAUCUACUUGUAUCUAGCUUAGAGU__UUGAAAGUCAAAGCAAGGAUAUUAAGCCAUA__CAUAAA_AG ......(((..((((..........((((.....)))).(((((.....((((...........))))....)))))........))))....)))...... ( -3.00 = -4.24 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:59 2006