Locus 473

Sequence ID 2R_DroMel_CAF1
Location 2,667,713 – 2,667,811
Length 98
Max. P 0.761278
window898

overview

Window 8

Location 2,667,713 – 2,667,811
Length 98
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 83.67
Mean single sequence MFE -22.53
Consensus MFE -14.01
Energy contribution -14.23
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -2.54
Structure conservation index 0.62
SVM decision value 0.50
SVM RNA-class probability 0.761278
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2667713 98 + 20766785
CUAUCUGAGGGAUGAAGCGUUUUUCGCGAUAUUUAAUUAUU--CAUUAGUAGGUACCUACUACCUACUCUUUAACACCUUCCAAUAUCAGAAAGAACCCC
((.(((((.(((.(..(((.....)))..............--....((((((((.....)))))))).........).)))....))))).))...... ( -22.60)
>DroSec_CAF1 100889 91 + 1
CUAUCUGAGGGAGGUCCCGUUUUUCGCG---------UAUCAGCAUUAGUUGGUACCUACUAACUACUCUUUAACACCUUCCAAUAUUAGAAAGAACCUU
((.((((((((((((..........((.---------.....))..((((((((....)))))))).........)))))))....))))).))...... ( -22.30)
>DroSim_CAF1 99023 100 + 1
CUAUCUAAGGGAGGUCCCGUUUUUCGCGAUAUUGAAGUAUCCGCAUUAGUUGGUACCUACUACCUACUCUUUAGCACCUUCCAAUAUUAGAAAGAACCUU
((.((((((((((((.(........(((((((....)))).)))...(((.((((.....)))).))).....).)))))))....))))).))...... ( -22.70)
>consensus
CUAUCUGAGGGAGGUCCCGUUUUUCGCGAUAUU_AA_UAUC_GCAUUAGUUGGUACCUACUACCUACUCUUUAACACCUUCCAAUAUUAGAAAGAACCUU
((.(((((((((((...(((.....)))...................(((.((((.....)))).)))........))))))....))))).))...... (-14.01 = -14.23 +   0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:27 2006