Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,515,133 – 15,515,261 |
Length | 128 |
Max. P | 0.978602 |
Location | 15,515,133 – 15,515,238 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.27 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -29.80 |
Energy contribution | -29.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.98 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15515133 105 + 20766785 AUUUUAAUA-------AAAAAGAGAAC--AACUUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCGUGUUAU .........-------........(((--(......((((((.((((.......))))........((((((((((((....))))).....))))))).))))))..)))).. ( -30.80) >DroPse_CAF1 348282 105 + 1 AA-AUGAAA-------AAAAAUCU-ACAUCUCCUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCACGUCUU ..-......-------........-...........((((((.((((.......))))........((((((((((((....))))).....))))))).))))))........ ( -29.80) >DroSim_CAF1 288483 103 + 1 AA-AAGAAA-------AAAAAGAG-AC--AACUUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCGUGCUAU ..-......-------..((((..-..--..)))).((((((.((((.......))))........((((((((((((....))))).....))))))).))))))........ ( -29.90) >DroEre_CAF1 298471 95 + 1 ------------------AAAGAAUAC-GAACUUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGCUGU ------------------.........-........((((((.((((.......))))........((((((((((((....))))).....))))))).))))))........ ( -29.80) >DroYak_CAF1 306333 106 + 1 CCUUGAAUA-------A-AAAAAGUACUUGACUUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCUUGUUAU .....((((-------(-..(((((.....))))).((((((.((((.......))))........((((((((((((....))))).....))))))).)))))).))))).. ( -32.00) >DroPer_CAF1 311921 112 + 1 GA-AAAAAAAAUUUUAAAAAAUCU-ACAUCUCCUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCACGUCUU ..-.....................-...........((((((.((((.......))))........((((((((((((....))))).....))))))).))))))........ ( -29.80) >consensus AA_AAAAAA_______AAAAAGAG_AC_UAACUUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGUUAU ....................................((((((.((((.......))))........((((((((((((....))))).....))))))).))))))........ (-29.80 = -29.80 + 0.00)
Location | 15,515,158 – 15,515,261 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.64 |
Mean single sequence MFE | -36.02 |
Consensus MFE | -29.80 |
Energy contribution | -29.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 0.83 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15515158 103 + 20766785 UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCGUGUUAUAUU-CGUUGACAGAACGUUAUUAU---------------- ..((((((.((((.......))))........((((((((((((....))))).....))))))).))))))..(((((....-...)))))............---------------- ( -32.10) >DroSec_CAF1 308643 104 + 1 UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCGUGUUGUACCCCUUUGACAGAACGUUAUUAA---------------- ..((((((.((((.......))))........((((((((((((....))))).....))))))).))))))(((.((((.........)))).))).......---------------- ( -32.60) >DroEre_CAF1 298486 103 + 1 UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGCUGUUUC-UGUUGUCAGAACGUGGUGAU---------------- ..((((((.((((.......))))........((((((((((((....))))).....))))))).))))))...((..((((-((....))))).)..))...---------------- ( -36.00) >DroYak_CAF1 306359 103 + 1 UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCUUGUUAUUUC-UGUUGUCAAAACGUCAUCAU---------------- .......((((.(((..(((...((((.((((((((((((((((....))))).....)))))))...)))).))))...)))-....)))....)))).....---------------- ( -30.60) >DroAna_CAF1 286698 117 + 1 UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCUUGUGCUACGGGGCUGCCA-AACGGCAACUUCAAC--ACGGGGUGGG ((((((....(((.......)))((((.((((((((((((((((....))))).....)))))))...)))).)))).....((((.((((.-...)))).))))...--..)))))).. ( -46.50) >DroPer_CAF1 311953 118 + 1 UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCACGUCUUAGU-AAGUGGCUAA-CUGCGAAUACAAUCUACGGGCGGAA ..((((((.((((.......))))........((((((((((((....))))).....))))))).))))))..((((((((.-..(((((...-..))...)))...))).)))))... ( -38.30) >consensus UACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGUUAUAUC_CGUUGACAGAACGUCAUCAU________________ ..((((((.((((.......))))........((((((((((((....))))).....))))))).))))))................................................ (-29.80 = -29.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:56 2006