Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,506,972 – 15,507,071 |
Length | 99 |
Max. P | 0.933886 |
Location | 15,506,972 – 15,507,071 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 75.11 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -19.00 |
Energy contribution | -19.12 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.21 |
Mean z-score | -1.77 |
Structure conservation index | 0.63 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15506972 99 + 20766785 -UGUGGC-UCUUCCAGGCAC--U--UUGCCCCCGCGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAGUCGCAGCGUCUAUUUGCCAUGGCAAUGGUA -.(((((-.......(((..--.--..)))...((((((((....((((((.((((...))))..)))))).....))))))))......))))).......... ( -34.60) >DroVir_CAF1 406274 96 + 1 ----CAC-ACUUCAAAAGGUCUCACACUGUUGCACGUUGCGUAUACGCUCAGUUGCACCACAAAAUGAGCGAAAAUCGCGCCAUCUAUUUGCCAUGGCAAU---- ----...-.........(((.(((...((((((((...(((....)))...).))))..)))...)))(((.....))))))......((((....)))).---- ( -21.10) >DroPse_CAF1 339656 95 + 1 -GGUGGC-------AAGCAC--CGGUCUACCCCGUGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAAUCGCAGCAUCUAUUUGCCAUGGCAAUGGAA -((((..-------...)))--)((......)).(((((((....((((((.((((...))))..)))))).....)))))))((((((.((....)))))))). ( -34.20) >DroWil_CAF1 564672 104 + 1 -AAUACCAACUUCAACUCAUUCCAACCUCCCGCAUAUUGCGCAUACGCUCAGUUGCAUCGCAAAAUGGGCGAAAAUCUCAGCGUCUAUUUGUCAUGGCAAUGGGA -..............(((((((((.......(((.((((.((....)).)))))))...(((((.((((((..........)))))))))))..))).)))))). ( -25.20) >DroAna_CAF1 277122 100 + 1 AUGCGGC-UCUUCCAGGCAC--U--UUGCCCCCGCGUUGCGUAUACGCUCAGUUGCACCACAAAAUAAGUGAGAAUCGCAGCUUCUAUUUGCCAUGGCAAUGGCA .((((..-(((..(.(((..--.--..)))...(((..(((....))).....)))............)..)))..)))).........((((((....)))))) ( -29.30) >DroPer_CAF1 303299 95 + 1 -GGUGGC-------AGGCAC--CGGUCUACCCCGCGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAAUCGCAGCAUCUAUUUGCCAUGGCAAUGGAA -((.((.-------((((..--..)))).))))..((((((....((((((.((((...))))..)))))).....)))))).((((((.((....)))))))). ( -36.40) >consensus _GGUGGC__CUUC_AGGCAC__C__UCUCCCCCGCGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAAUCGCAGCAUCUAUUUGCCAUGGCAAUGGAA ...................................((((((....((((((.(((.....)))..)))))).....))))))......((((....))))..... (-19.00 = -19.12 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:48 2006