Locus 4726

Sequence ID 2R_DroMel_CAF1
Location 15,501,836 – 15,501,933
Length 97
Max. P 0.999206
window7604

overview

Window 4

Location 15,501,836 – 15,501,933
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 88.87
Mean single sequence MFE -30.42
Consensus MFE -26.64
Energy contribution -27.16
Covariance contribution 0.52
Combinations/Pair 1.12
Mean z-score -2.70
Structure conservation index 0.88
SVM decision value 3.43
SVM RNA-class probability 0.999206
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15501836 97 - 20766785
GACUGAACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAU
..........((((.(((......)))))))....(((((((((((((....)))))..)))))))).............................. ( -28.20)
>DroSec_CAF1 294510 97 - 1
GACUGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAGUACCACCAUUACCAUCUCCAU
.(((((....((((.(((......)))))))....(((((((((((((....)))))..)))))))).....))))).................... ( -35.30)
>DroSim_CAF1 273458 97 - 1
GACUGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAU
...((((.((((((.(((......)))))))....(((((((((((((....)))))..)))))))).......................)))))). ( -32.60)
>DroYak_CAF1 292823 97 - 1
GACUGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUGUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAU
...((((.((((((.(((......)))))))....(((((((((((((....)))))..)))))))).......................)))))). ( -32.60)
>DroAna_CAF1 272319 83 - 1
GACUGGC---CGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUUUUCGACCUGGGAC--C------CAU--CCACC-UCCCCAUCUCCAU
((.(((.---((((.(((......)))))))....((.((((((.((.........))))))))--)------)..--.....-...)))))..... ( -23.40)
>consensus
GACUGGACGACGGCACGUUUAAUUGCGGCCGAUAAGGUGUUCCGCGGAAUCCUCCGUCUGGAAUACCCACACCCAUUACCACCAUUACCAUCUCCAU
((.(((....((((.(((......)))))))....(((((((((((((....)))))..))))))))....................)))))..... (-26.64 = -27.16 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:47 2006