Locus 4724

Sequence ID 2R_DroMel_CAF1
Location 15,492,541 – 15,492,646
Length 105
Max. P 0.602080
window7600

overview

Window 0

Location 15,492,541 – 15,492,646
Length 105
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 78.63
Mean single sequence MFE -22.65
Consensus MFE -11.08
Energy contribution -12.58
Covariance contribution 1.50
Combinations/Pair 1.13
Mean z-score -2.35
Structure conservation index 0.49
SVM decision value 0.14
SVM RNA-class probability 0.602080
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15492541 105 + 20766785
UGUACCUUGAAAAACCAAAAGUUUCUAUGAACCCUGAACUAGUAGUCAUACUGUUUCUACUUCCAUAUUUAGUAAGCU--GGAUAAAUGGUUCUUCAUAGGUAUAAA
(((((((((((.(((((...........(((....(((.(((((....))))).)))...)))..(((((((....))--)))))..))))).)))).))))))).. ( -26.50)
>DroSec_CAF1 285221 96 + 1
UGUACGUUGAAAAACUAAAAGUUUCUAGGAACACUGAAAUAGUAGUC---------CUACUUCCAUAUCUAGUAAGCU--GGAUAAAUGGUUCUUCAUAGGUAUCAA
.((((.(((((.(((((........(((((..((((...))))..))---------)))......(((((((....))--)))))..))))).)))).).))))... ( -22.70)
>DroSim_CAF1 264175 96 + 1
UGUACCUCGAAAAACUAAAAGUUUCUAGGAACACUGAAAUAGUAGUC---------CUACUUCCAUAUCUAGUAAGCU--GGAUAAAUGGAUCUUCAUAGGUAUCAA
.((((((.(((..............(((((..((((...))))..))---------)))..(((((((((((....))--)))))..))))..)))..))))))... ( -23.90)
>DroYak_CAF1 283394 104 + 1
---GCCUUGAAAAGCCAUGAGUUUCUAGGAAAACUAAAAUAAUAGCCAUACUGUUCCUACUUCCCUAUCUAGUAAGCUUUUCUUACAGCGUUAUUCGUAGGCAUCAA
---((((((((.((((.........((((((..(((......)))........))))))............(((((.....))))).).))).)))).))))..... ( -17.50)
>consensus
UGUACCUUGAAAAACCAAAAGUUUCUAGGAACACUGAAAUAGUAGUC_________CUACUUCCAUAUCUAGUAAGCU__GGAUAAAUGGUUCUUCAUAGGUAUCAA
.((((((((((.(((((..((((((((((...........(((((...........)))))......))))).))))).........))))).)))).))))))... (-11.08 = -12.58 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:43 2006