Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,487,887 – 15,487,987 |
Length | 100 |
Max. P | 0.555968 |
Location | 15,487,887 – 15,487,987 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 69.75 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -11.48 |
Energy contribution | -13.98 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.18 |
Mean z-score | -1.86 |
Structure conservation index | 0.46 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15487887 100 + 20766785 ACUAAGGGCGAUUCAGGAUUGC-----AAAA-----------CUUCUGCUAUCAAAAAGAGGUAGCUUAUAAUAGUUAUCAGGUUCCUAAUUUCCAAGUUCCAAGAAAUGUCAUGU ......((((.(((..(((.((-----(...-----------....))).))).......(((((((......))))))).((...((........))..))..))).)))).... ( -17.10) >DroSec_CAF1 280559 111 + 1 ACUGAGGGCAAUUUGGGAGUCC-----AAAAUUAAACUUAACCUUCGACUAUCAAAAAAUGGUGGAUAAUAAUAGUUAUUAGGUCCCAAACUGCCAAGUUCCAGGAAAUUUCCUGU (((...((((.(((((((..((-----.................((.(((((......))))).))(((((.....)))))))))))))).)))).)))..(((((....))))). ( -30.30) >DroSim_CAF1 259525 111 + 1 ACUGAGGGCAAUUUGGGAGUCC-----AAAAUUAAACUUAUCCUUCGACUAUCAAAAAAUGGUGGAUAAUAAUAGUUAUUAGGUCCCAAACUGCCAAGUUCCAGGAAAUUUCCUUU (((...((((.(((((((.(..-----..(((((...((((((....(((((......)))))))))))...)))))....).))))))).)))).)))...((((....)))).. ( -28.70) >DroEre_CAF1 268759 108 + 1 AUCAACGUCAAUUUGGGACAACAUUUGAAUUUUAAACGAAACCUUCGCGCAUCAACAAGAUGUGGGUAAUCAU---UA-AAGAUCCCCAAUUGCCAAGUCCCAGGCAGUUUC---- ......(((....((((((.................(((.....)))((((((.....))))))((..(((..---..-..)))..)).........)))))))))......---- ( -23.60) >consensus ACUAAGGGCAAUUUGGGAGUCC_____AAAAUUAAACUUAACCUUCGACUAUCAAAAAAAGGUGGAUAAUAAUAGUUAUUAGGUCCCAAACUGCCAAGUUCCAGGAAAUUUCCUGU ......((((((((((((..............................(((((.......))))).(((((.....)))))..))))))))))))..................... (-11.48 = -13.98 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:36 2006