| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,667,469 – 2,667,567 |
| Length | 98 |
| Max. P | 0.939332 |
| Location | 2,667,469 – 2,667,567 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -18.84 |
| Energy contribution | -18.07 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2667469 98 + 20766785 UCACUCUUAAUUCGACACUGCAACACAAAAGGUGCAGACAUUUUGAUUGCCUUCGUAAUCAAAUGAAUGUAGAAUAGCAAAUCAGAAAUCUGAAAUUC .........((((.((((((((.(......).))))).(((((.((((((....)))))))))))..))).))))......((((....))))..... ( -21.90) >DroSec_CAF1 100570 96 + 1 --ACUCUCAAUUCGACACUGCAACACAAAAGGUGCAGACAGUUUAAUCGCCUCCAUAAUCAAAUGGAUGUUGAAUAACAAAUUAGAAAUCUGAAGUUC --.......(((((((((((((.(......).)))))..............(((((......)))))))))))))......((((....))))..... ( -19.60) >DroSim_CAF1 98706 96 + 1 --ACUCUCAAUUCGACACUGCAACACAAAAGGUGCAGACAGAUUGAUCGCCUCCAUAAUCAAAUGGAUGUUGAAUAACAAAUUGGAAAUCUGAAGUUC --...........(((.(((((.(......).))))).((((((.....(((((((......)))))((((....))))....)).))))))..))). ( -19.20) >consensus __ACUCUCAAUUCGACACUGCAACACAAAAGGUGCAGACAGUUUGAUCGCCUCCAUAAUCAAAUGGAUGUUGAAUAACAAAUUAGAAAUCUGAAGUUC .........(((((((((((((.(......).)))))..............(((((......)))))))))))))......((((....))))..... (-18.84 = -18.07 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:26 2006