Locus 4719

Sequence ID 2R_DroMel_CAF1
Location 15,485,510 – 15,485,630
Length 120
Max. P 0.862572
window7592

overview

Window 2

Location 15,485,510 – 15,485,630
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.65
Mean single sequence MFE -36.02
Consensus MFE -25.02
Energy contribution -26.54
Covariance contribution 1.52
Combinations/Pair 1.10
Mean z-score -2.42
Structure conservation index 0.69
SVM decision value 0.83
SVM RNA-class probability 0.862572
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15485510 120 + 20766785
UAUAGAUCGUGAUUUCACUUUUCUAUGCUAGUUGCUUGCCAAAGCGAUUAGUAAUUAUUAAUUGUGGAAUGGCCCAAUCGUUAAACAGAUUUGGGCGGAAUCGAAUGCCCAAAGGGGUAC
.........(((((((....(((((((((((((((((....)))))))))))...........))))))..((((((((........)).)))))))))))))..(((((....))))). ( -38.60)
>DroSec_CAF1 278132 111 + 1
UAUAGACCGCGAUUUCACGUUUCUAUGCUAUUUGCUUGCCAAAGCGAUUAGUAAUUAUUAAUUGUGGAAAG-------CAUU--UCCGAUUUGGGCGGAAUCGAAUGCCCAAAGGGGUAC
.....(((((..(((((((......(((((.((((((....)))))).))))).........))))))).)-------)...--.((...(((((((........))))))).))))).. ( -33.76)
>DroSim_CAF1 257088 111 + 1
UAUAGACCGUGAUUUCACGUUUCUAUGCUAGUUGCUUGCCAAAGCGAUUAGUAAUUAUUAAUUGUGGAAAG-------CAUU--UCCGAUUUGGGCGGAAUCGAAUGGCCAAAGGGGUAC
.....(((((..(((((((......((((((((((((....)))))))))))).........))))))).)-------)...--.((...((((.((........)).)))).))))).. ( -30.76)
>DroEre_CAF1 266403 120 + 1
UAUAGCCGGUGAUUUCACGUUUCUAUGCCAGUUGCUUGCCAAAGCAAUUAGUAAUUAUUAAUUGUGGAGUGGGCCAAUCGGAAAACCGAUUUGGGUGGAAUCGAAUGCCCAAAGGGGUGC
.........(((((((((...(((((.(((...((((....))))(((((((....))))))).))).)))))((((((((....)))).)))))))))))))...((((....)))).. ( -36.40)
>DroYak_CAF1 276418 120 + 1
UAUAGAGCGUGAUUUCACGUUUCUAUGCUAGUUGCUGGCCAAAGCGAUAAGUAAUUAUUAAUUGUGGAAUGGCCGAAUCGGAAAACCGAUUUGUGCGCAAUCGAAUGCCCAAAGGGGUAC
(((((((((((....)))).)))))))...(((((.(((((..(((((.(((....))).)))))....)))))(((((((....)))))))....)))))....(((((....))))). ( -40.60)
>consensus
UAUAGACCGUGAUUUCACGUUUCUAUGCUAGUUGCUUGCCAAAGCGAUUAGUAAUUAUUAAUUGUGGAAUGG_C_AAUCGUUAAACCGAUUUGGGCGGAAUCGAAUGCCCAAAGGGGUAC
............(((((((......((((((((((((....)))))))))))).........)))))))...............(((..((((((((........))))))))..))).. (-25.02 = -26.54 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:35 2006