Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,456,596 – 15,456,690 |
Length | 94 |
Max. P | 0.745960 |
Location | 15,456,596 – 15,456,690 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.12 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -14.79 |
Energy contribution | -15.15 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -1.94 |
Structure conservation index | 0.50 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15456596 94 - 20766785 GCUGC--AAA------AUCUCAAAGCAUACUUUCGGGCGGCGCUGAAAAAAGUGCUCGUGAAAGCGUAGUAGAA--AAACGGGCUGCAACGGGCUGUUCGUGUG (((((--...------..((.((((....)))).))((((((((......))))).)))......)))))....--..((((((.((.....)).))))))... ( -25.70) >DroVir_CAF1 349553 101 - 1 GCGACUGAAAUUUCAAAUUUCAAAGCAUACUUUUAGGCGCCGCUGAAAAAAGUGCUCGAGAAAGUGUUGCCGCAGCAAACGGGCCAC---UGGCUGCCAUUGCA ((((.((((((.....))))))..((((((((((...((.((((......))))..)).))))))).))).(((((...(((....)---)))))))..)))). ( -27.20) >DroPse_CAF1 294605 97 - 1 GCGGC--AGA-UGCGGAUUUCAAAGCAUACUUUCAGGCGGCACUGAAAAAAGUGCUCGAGAAAGUGUAGUAGAA--AAACGGGCUGCUGCCGGCACGC--UGUG (((((--((.-(.((..((((...((((((((((...(((((((......))))).)).)))))))).)).)))--)..)).))))))))(((....)--)).. ( -37.10) >DroEre_CAF1 241651 87 - 1 GCUGC--AGA------AUCUCAAAGCAUACUUUCGGGCGGCGCUGAAAAAAGUGCUCGUGAAAGUGUAGUAGAA--AAACGGGCUGUAUCUGUGUGC------- (((((--(((------.......((((((((((((.(.((((((......))))))).))))))))).((....--..))..)))...)))))).))------- ( -26.50) >DroWil_CAF1 494962 95 - 1 GCGGC--AGC-UACAAAUUUCAAAGCAUACUUUUAGGCGCCACUGAAAAAAGUACUCGAGAAAGUAUAGUAGAA--AAACGGGCUGCUGCCUUGACUG--UG-- (((((--(((-(.....((((...((((((((((...((..(((......)))...)).)))))))).)).)))--)....)))))))))........--..-- ( -26.40) >DroPer_CAF1 256454 97 - 1 GCGGC--AGA-UGCGGAUUUCAAAGCAUACUUUCAGGCGGCACUGAAAAAAGUGCUCGAGAAAGUGUAGUAGAA--AAACGGGCUGCUGCCGUCACGC--UGUG (((((--((.-(.((..((((...((((((((((...(((((((......))))).)).)))))))).)).)))--)..)).))))))))........--.... ( -35.90) >consensus GCGGC__AGA_U_C__AUUUCAAAGCAUACUUUCAGGCGGCACUGAAAAAAGUGCUCGAGAAAGUGUAGUAGAA__AAACGGGCUGCUGCCGGCACCC__UGUG (((((...................((((((((((...(((((((......))))).)).)))))))).)).(.......)..)))))................. (-14.79 = -15.15 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:34 2006