Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,455,917 – 15,456,010 |
Length | 93 |
Max. P | 0.641211 |
Location | 15,455,917 – 15,456,010 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.95 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -22.66 |
Energy contribution | -22.52 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.80 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15455917 93 - 20766785 UCU-----------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGUGCUU----------GUC ...-----------------..........((((((.(((..(.(((((((.....(((((((...((((...))))..)))))))....))))))).)..))))))----------))) ( -28.80) >DroGri_CAF1 309140 105 - 1 UUGUUGCUGCUCUCU-----UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCUU----------GCA ...............-----...........((((((.......(((..((((...(((((((...((((...))))..)))))))))))..)))((....))))))----------)). ( -28.40) >DroEre_CAF1 240953 93 - 1 UCU-----------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCCC----------GUC ...-----------------..........(((...........(((..((((...(((((((...((((...))))..)))))))))))..)))((....))))).----------... ( -25.60) >DroWil_CAF1 492384 103 - 1 UCU-----------------UUUUGUCUUGGGCAAGUUAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGAAUGACGGUGACAGUC ...-----------------..((((.....))))(((((((..(((..((((...(((((((...((((...))))..)))))))))))..)))((....)))))))))(....).... ( -32.50) >DroMoj_CAF1 390769 110 - 1 UCUGUCUCGCUCUCUGGCGCUUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCAU----------GCA ........((......(((((((((.(....)))))........(((((((.....(((((((...((((...))))..)))))))....)))))))...)))))..----------)). ( -31.40) >DroPer_CAF1 255586 93 - 1 UCC-----------------CUUUGUCUCCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCCCGGCACUC----------CUC ...-----------------...((((...(((..(.....)..(((..((((...(((((((...((((...))))..)))))))))))..))))))..))))...----------... ( -23.60) >consensus UCU_________________UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCUU__________GUC .....................(((((.....)))))........(((..((((...(((((((...((((...))))..)))))))))))..)))((....))................. (-22.66 = -22.52 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:33 2006