| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,450,775 – 15,450,871 |
| Length | 96 |
| Max. P | 0.511441 |
| Location | 15,450,775 – 15,450,871 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.46 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -13.83 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15450775 96 - 20766785 UGAGCACGGCGAGAACAGAACAGAAAUUGCAAUUGAAGUUAAUUUCAACAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGAAAUUCCCAAUCC--------AAG ..(((((((((....(......)....(((((((...(((......))).))))))))))).....)))))...(((((....))))).....--------... ( -21.60) >DroVir_CAF1 339378 79 - 1 ---------------CAG--CACAAAUUGCAAUUGAAGUUAAUUUCAGCAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGACAUUCCCGAGCC--------CAA ---------------.((--((((..(((((..(((((....)))))((.....)).)).)))..))))))...(((((....))))).....--------... ( -17.90) >DroSim_CAF1 227673 96 - 1 UGAGCACGGCGAGAACAGAACAGAAAUUGCAAUUGAAGUUAAUUUCAACAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGAAAUUCCCAAUCC--------GAG ..(((((((((....(......)....(((((((...(((......))).))))))))))).....)))))...(((((....))))).....--------... ( -21.60) >DroEre_CAF1 235880 96 - 1 UGAGCACGGCGCGAACAGAACAGAAAUUGCAAUUGAAGUUAAUUUCAACAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGAAAUUCCUUAUCC--------CAG ..((((((((((.....).........(((((((...(((......))).))))))))))).....)))))..((((((....))))))....--------... ( -19.50) >DroYak_CAF1 244060 89 - 1 UGGGCACGGCG-----AGAACAGAAAUUGCAAUUGAAGUUAAUUUCAACAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGAAAUUCCUUAUCC--------G-- ..((((..(((-----(.....((((((((.......).)))))))......)))).))))............((((((....))))))....--------.-- ( -20.30) >DroAna_CAF1 229454 103 - 1 AGAG-GCGGCGAGAACAGAACCCAAAUUGCAAUUGAAGUUAAUUUCAACAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGAAAUACCGAAUCCCGGGUUCCAAU ....-............((((((....(((((((...(((......))).))))))).................((((.(......)...)))))))))).... ( -21.70) >consensus UGAGCACGGCGAGAACAGAACAGAAAUUGCAAUUGAAGUUAAUUUCAACAAAUUGCAUGCCAAAAUGUGUUAAAGGGAAGAAAUUCCCAAUCC________AAG .......((((................(((((((...(((......))).))))))))))).............(((((....)))))................ (-13.83 = -14.52 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:30 2006