Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,450,171 – 15,450,268 |
Length | 97 |
Max. P | 0.739652 |
Location | 15,450,171 – 15,450,268 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.97 |
Mean single sequence MFE | -45.16 |
Consensus MFE | -37.46 |
Energy contribution | -39.50 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 0.83 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15450171 97 + 20766785 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCAACGUCCGC (((((...(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...)))))))....))))).. ( -46.90) >DroSec_CAF1 248082 97 + 1 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCGACGUCCGC (((((...(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...)))))))....))))).. ( -46.90) >DroSim_CAF1 227081 97 + 1 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCGACGUCCGC (((((...(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...)))))))....))))).. ( -46.90) >DroEre_CAF1 235205 77 + 1 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCC---GUC----------------- .((((((....(((..(..(((...)))..)..)))...(((((.(((..(((....))).))))))))..)))---)))----------------- ( -38.00) >DroYak_CAF1 243410 94 + 1 GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCU---GUCCGCUGUCCACCGUCCGC ((((((..(((((.((((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))---)...)))))...)))))).. ( -47.10) >consensus GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCAACGUCCGC (((((((.(..(((((((((((((.(((.....))).))))(((.(((..(((....))).))))))..))))).))))).)))))))......... (-37.46 = -39.50 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:29 2006