Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,447,001 – 15,447,108 |
Length | 107 |
Max. P | 0.938263 |
Location | 15,447,001 – 15,447,108 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -18.86 |
Consensus MFE | -18.41 |
Energy contribution | -18.41 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.09 |
Structure conservation index | 0.98 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15447001 107 + 20766785 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))...((....)-)------- ( -19.31) >DroPse_CAF1 284665 107 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGGCUCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))..........-.------- ( -18.41) >DroGri_CAF1 296857 114 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCAA-CACACACA .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))..........-........ ( -18.41) >DroMoj_CAF1 376160 115 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCACACACACACA .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))................... ( -18.41) >DroAna_CAF1 225523 107 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCCCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))...((....)-)------- ( -19.31) >DroPer_CAF1 246510 107 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))...((....)-)------- ( -19.31) >consensus CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCGG_C_______ .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))................... (-18.41 = -18.41 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:28 2006