Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,439,539 – 15,439,651 |
Length | 112 |
Max. P | 0.627103 |
Location | 15,439,539 – 15,439,651 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.72 |
Mean single sequence MFE | -17.94 |
Consensus MFE | -16.48 |
Energy contribution | -16.28 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.21 |
Structure conservation index | 0.92 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15439539 112 + 20766785 AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGAAACAAGAGUUUAAUAGCGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG-GAAAAAAACAAGAACUAAAUG ....(((((((((..((((((.....))))......(((((....)))))........))..)))))))))....................-..................... ( -19.00) >DroSec_CAF1 237338 111 + 1 AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACAAGAGUUUAAGAGCGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG-GAAA-AAUCUAGAACUAAAUG ....(((((((((..((((........(....)...(((((....)))))......))))..)))))))))....................-....-................ ( -19.60) >DroSim_CAF1 216240 111 + 1 AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACAAGAGUUUAAUAACGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG-GAAA-AAACUAGAACUAAAUG ....(((((((((...(((((.....))))).....(((((....)))))............)))))))))....................-....-................ ( -17.50) >DroEre_CAF1 224568 112 + 1 AAUGGAGUUGGAUAAGUUCACUGCAAAUGAAAAAUGUCUUGGGAACGAGAAUUUAAUAGCGCAUUCAGCUAAUAAUUAAAUUUAAAAAGACGGGAG-AAACUAGAGCUAAAUG ..(((..((((.....(((.((((............(((((....)))))..(((.((((.......)))).))).............).))))))-...))))..))).... ( -17.80) >DroYak_CAF1 232198 112 + 1 AAUGAAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACGAGAAUUUAAUAGCGCAUUCAGCUAAUAAUUAAAUUUAAAAGGAGGGGAA-AAAGUAGAGCUAACUG .....((((((((..((((((.....))))......(((((....)))))........))..))))))))..........................-................ ( -15.80) >consensus AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACAAGAGUUUAAUAGCGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG_GAAA_AAACUAGAACUAAAUG ....(((((((((..((((((.....)))).((((.(((((....)))))))))....))..))))))))).......................................... (-16.48 = -16.28 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:27 2006