Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,437,113 – 15,437,225 |
Length | 112 |
Max. P | 0.698332 |
Location | 15,437,113 – 15,437,225 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 73.12 |
Mean single sequence MFE | -23.66 |
Consensus MFE | -11.54 |
Energy contribution | -11.70 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.40 |
Mean z-score | -1.77 |
Structure conservation index | 0.49 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15437113 112 + 20766785 UACAAUAUAAGACUUAUAUUAAAUAUCAUUUGU-AAUUUUCCCGCCAAAUCAGGGCUAUUUCUCUGCACACUGCUGUCUAUCUAAGUGGGCGGAGGACAUUGCAACCAUCUAA ...((((((.....)))))).........((((-(((.((((((((....(((((......)))))..((((............))))))))).))).)))))))........ ( -26.00) >DroSec_CAF1 234973 88 + 1 ----------------------AUAUCAUUUAUCAAUUUUUCCGCCAGGUCAUCACUAUUU--CUGUACACCGCUGUCUAUCUAAGUGGGCGGAGGACAU-GCAGCCAUCUAA ----------------------...............((((((((((((...........)--)))....(((((.........)))))))))))))...-............ ( -17.50) >DroSim_CAF1 213837 90 + 1 ----------------------AUAUCAUUUAUCAAUUUUUCCGCCAAGUCAUCACUAUUUCUCUGUACAUUGCUGUAUGUCUAAGUGGGCGGAGGACAU-GCAGCCAUCUAA ----------------------..................................................(((((((((((..(....)...))))))-)))))....... ( -16.50) >DroEre_CAF1 222219 91 + 1 ----------------------AUAUGCGUUGUUAUACACUCUGCCAAAUCAGUGCUAUUUUUCUGUACACUGCUGUCCAUCUGGGUGGGCGGAGGACAUUGCAGCCAUCUAA ----------------------..(((.(((((......(((((((....(((((.(((......)))))))).(..((....))..))))))))......)))))))).... ( -28.00) >DroYak_CAF1 229746 91 + 1 ----------------------ACAUACUUUGUAAUGUUCUGUGCUCAAUCAGUACUAUUUUUGUGUACAGUGCUGUCCAUCUGAGUGGGCGGAGGACAUUGCAGCCAUCUAA ----------------------.......((((((((((((.((((((.((((..........(((.(((....))).))))))).)))))).))))))))))))........ ( -30.30) >consensus ______________________AUAUCAUUUGUCAAUUUUUCCGCCAAAUCAGCACUAUUUCUCUGUACACUGCUGUCUAUCUAAGUGGGCGGAGGACAUUGCAGCCAUCUAA .............................((((....(((((((((........((.........)).((((...(.....)..)))))))))))))....))))........ (-11.54 = -11.70 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:26 2006