| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,409,348 – 15,409,438 |
| Length | 90 |
| Max. P | 0.765988 |
| Location | 15,409,348 – 15,409,438 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -15.10 |
| Energy contribution | -14.52 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.765988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15409348 90 - 20766785 CAUUGAGGGCGUGCUAAUCGUAAA--AAGAAAACAC-AGACGAAAUUAUGAAUUUGUUUGGCGUAAUUUUACGCGCCCA--AGACAACAGA--CCCG----------- ......((((..............--.........(-(((((((........))))))))(((((....))))))))).--..........--....----------- ( -21.30) >DroPse_CAF1 244844 90 - 1 CUUUAAGGGCGUGCUAAUCAUAAA--AGAAAAAUAC-AACAAAAAUUAUGAAUUUUUUUGGCGUAAUUUUACGCGCUCAGAAGACAA--GA--GCCA----------- .......(((...((..((((((.--..........-........))))))..(((((((((((........)))).)))))))..)--).--))).----------- ( -16.91) >DroWil_CAF1 425839 103 - 1 UUUUAAGGGCGUGCUAAUCAUAAA--AAGAAA-UACAACACAAAAUUAUGAAUUUGUUUGGCGUAAUUUUACACGCUCA--AUACAAGCGAAAGCUAUGGGGGAGGAA ......(((((((....((.....--..))..-........(((((((((...........))))))))).))))))).--...(((((....))).))......... ( -20.60) >DroYak_CAF1 208785 90 - 1 CUUUAAGGGCGUGCUAAUCGUAAA--AAGAAUACAC-AGACGAAAUUAUGAAUUUGUUUGGCGUAAUUUUACGCGCCCA--AGACAACAGA--CCUG----------- ......(((((((.(((((.....--..)).(((.(-(((((((........))))))))..)))...)))))))))).--..........--....----------- ( -21.80) >DroAna_CAF1 192747 92 - 1 CCUUAAGGGCGUGCUAAUCAUAAAAAAAGAAAAUAC-AACCGAAAUUAUGAAUUUGUUUGGUGUAAUUUUAAGCGCCCA--AGACAAUAAA--GAUC----------- ......((((((................((((.(((-(.(((((............))))))))).))))..)))))).--..........--....----------- ( -16.27) >DroPer_CAF1 204856 90 - 1 CUUUAAGGGCGUGCUAAUCAUAAA--AGAAAAAUAC-AACAAAAAUUAUGAAUUUGUUUGGCGUAAUUUUACGCGCUCAGAAGACAA--GA--GCCA----------- .......(((.......((((((.--..........-........)))))).((((((((((((........)))))....))))))--).--))).----------- ( -16.01) >consensus CUUUAAGGGCGUGCUAAUCAUAAA__AAGAAAAUAC_AAACAAAAUUAUGAAUUUGUUUGGCGUAAUUUUACGCGCCCA__AGACAA_AGA__GCCA___________ ......(((((((((((((((((......................))))))......)))))(((....))))))))).............................. (-15.10 = -14.52 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:18 2006