Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,408,635 – 15,408,736 |
Length | 101 |
Max. P | 0.862491 |
Location | 15,408,635 – 15,408,736 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.10 |
Mean single sequence MFE | -19.75 |
Consensus MFE | -10.32 |
Energy contribution | -11.27 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.19 |
Mean z-score | -1.94 |
Structure conservation index | 0.52 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15408635 101 - 20766785 UCUGAUGGUGAGUGCCACA---CAUUUGUCAUGUGCCCCGCACAAAACAUGUCAGUGCCCAUUUCAAUCUGGUUUCCUUUCCUGCCACCUUGUCCCGC--CCAAAU- .(((((((..((((.....---))))..)).(((((...)))))......))))).((......(((..((((..........))))..)))....))--......- ( -18.90) >DroVir_CAF1 287996 87 - 1 U---GUACCAUAUGCCACA-------UGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUUAUCCUUGCU-----UCCUGCCACCUUUU---GC--CCAAACA .---.........((.(((-------(((..(((((...)))))..))))))...................((.-----....))........---))--....... ( -12.40) >DroPse_CAF1 243947 97 - 1 U---GUGGCAUAUGCCACAUGUCAUUUG-CUUGUGCCCCGCACAAAACGUGUCACUGCCCAUUUCAUCCCGGCU-----UCCUGCCACCUUUCCCUGCUCCUAGAU- (---(((((....))))))((.(((.(.-.((((((...)))))).).))).))................(((.-----....)))....................- ( -22.30) >DroEre_CAF1 201152 101 - 1 UCUGAUGGUGAGUGCCACA---CAUGUGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUCAAUCCGGAUUCCUUUCCUGCCACCUCGUCCCGC--CCAAAU- ...((.((((((((....(---(((((....(((((...)))))..))))))))))..............(((......)))...)))))).......--......- ( -23.10) >DroAna_CAF1 191937 79 - 1 U---GUGGCAUAUGCCACA-------UGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUCAUCCUUGCU-----UCCUGCCACCUUUCC------------- .---((((((......(((-------(((..(((((...)))))..))))))....((.............)).-----...))))))......------------- ( -19.52) >DroPer_CAF1 203951 97 - 1 U---GUGGCAUAUGCCACAUGUCAUUUG-CUUGUGCCCCGCACAAAACGUGUCACUGCCCAUUUCAUACCGGCU-----UCCUGCCACCUUUCCCUGCUCCUAGAU- (---(((((....))))))((.(((.(.-.((((((...)))))).).))).))................(((.-----....)))....................- ( -22.30) >consensus U___GUGGCAUAUGCCACA___CAUUUGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUCAUCCCGGCU_____UCCUGCCACCUUUCCC_GC__CCAAAU_ ....(((((....)))))........(((..(((((...)))))..))).....................(((..........)))..................... (-10.32 = -11.27 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:17 2006