Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,404,923 – 15,405,015 |
Length | 92 |
Max. P | 0.539682 |
Location | 15,404,923 – 15,405,015 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -30.78 |
Consensus MFE | -20.04 |
Energy contribution | -20.38 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15404923 92 + 20766785 ---------CGAACCUGUCCACAUCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUCGGAAAAAGCACUUUAGCGCAUUAGAAC-CCACG----------C- ---------...................(((((.((((((((.....(((((((((...................))))))).)))))))))).)-)))).----------.- ( -24.11) >DroVir_CAF1 282519 101 + 1 ---------UG--CCCGGCCACAGCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUACGAAAAAGCACUUUAGCGCAUUAGAAGGCCACGGCGGGGACCGA- ---------..--..(((((...(((..((((..((((((((.....(((((((((...((((....))))....))))))).))))))))))...)))))))..)).))).- ( -33.50) >DroPse_CAF1 239747 110 + 1 GCUCGGGCUCGGUGGCGGCCACAGCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUAGGAAAAAGCACUUUAGCGCAUUAGAAC-UCACGGCAGGAAGG-C- (((..((((..((((...))))))))..(((((.((((((((.....(((((((((..((((....)))).....))))))).)))))))))).)-))))))).......-.- ( -34.20) >DroWil_CAF1 416777 100 + 1 ACUCG-GCACAGCAGCGGCCACAGCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUAGGAAAAAGCACUUUAGCGCAUUAGAAC-GCACG----------G- .....-((......))(((....)))..(((.(.((((((((.....(((((((((..((((....)))).....))))))).)))))))))).)-.))).----------.- ( -26.00) >DroMoj_CAF1 305679 102 + 1 ---------UG--CCCGGCCACAGCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUACGAAAAAGCACUUUAGCGCAUUAGAAGGCCACGGCGGGAGCGGAC ---------..--.(((.((...(((..((((..((((((((.....(((((((((...((((....))))....))))))).))))))))))...))))))).))..))).. ( -32.70) >DroPer_CAF1 199770 110 + 1 GCUCGGGCUCGGUGGCGGCCACAGCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUAGGAAAAAGCACUUUAGCGCAUUAGAAC-UCACGGCAGGAAGG-C- (((..((((..((((...))))))))..(((((.((((((((.....(((((((((..((((....)))).....))))))).)))))))))).)-))))))).......-.- ( -34.20) >consensus _________CGG_CCCGGCCACAGCCAAGUGGGAUUUAGUGCAAAUUGCAAAGUGUAACUUGUUUUUAGGAAAAAGCACUUUAGCGCAUUAGAAC_CCACGGC_GGAA_G_C_ ................(((....)))..((((..((((((((.....(((((((((...................))))))).))))))))))...))))............. (-20.04 = -20.38 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:14 2006