Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,402,880 – 15,402,983 |
Length | 103 |
Max. P | 0.907804 |
Location | 15,402,880 – 15,402,983 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 87.18 |
Mean single sequence MFE | -28.91 |
Consensus MFE | -26.66 |
Energy contribution | -26.98 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.15 |
Mean z-score | -1.65 |
Structure conservation index | 0.92 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15402880 103 - 20766785 GUAUUUUUGCGGUAGCUCAACUAGAAUACGGCUUUAUUUAGGGGGGUCGAAAUAUCUCAAAGAUUCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU (((....)))((((((((...(((..(((((((((.((((((((....((......)).....))))))))))))).))))....)))....))))))))... ( -28.80) >DroSec_CAF1 208312 103 - 1 GUAUUUUUGCGGUAGCUCAACUAGAGUACGGCUUUAUUUAGGGGGGUCGAAAUAUAUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU (((....)))((((((((...(((..(((((((((......(((((((.............)))))))...))))).))))....)))....))))))))... ( -30.42) >DroSim_CAF1 187085 103 - 1 GUAUUUUUGCGGUAGCUCAACUAGAAUACGGCUUUAUUUAGGGGGGUCGAAAUAUCUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU (((....)))((((((((...(((..(((((((((.((((((((....((......)).....))))))))))))).))))....)))....))))))))... ( -31.60) >DroEre_CAF1 195488 89 - 1 GUAUUUUUGCGGUGGCUCUACAAGUAAACGGCUUUAUUUUGGGGGGUCGACAUAUCUUAAAGAUCCUUAGAGAAGCAC--------------GAGCUAUCUGU (((....)))((((((((.....(....).(((((...((..((((((.............))))))..)))))))..--------------))))))))... ( -23.12) >DroYak_CAF1 202277 103 - 1 GUACUUUUGCGGUGGCUCUACAAGAAUAUGGCUUUAUUCAGGGGGGUCGACAUAUCUUAAAGAUCCUUGGAGAAGCACGUAGCCGCUUACAGGAGCUAUCUGU ..........(((((((((..(((..(((((((((.((((..((((((.............))))))))))))))).))))....)))...)))))))))... ( -30.62) >consensus GUAUUUUUGCGGUAGCUCAACUAGAAUACGGCUUUAUUUAGGGGGGUCGAAAUAUCUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU (((....)))((((((((...(((..(((((((((.((((..((((((.............))))))))))))))).))))....)))....))))))))... (-26.66 = -26.98 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:12 2006