Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,394,228 – 15,394,318 |
Length | 90 |
Max. P | 0.614977 |
Location | 15,394,228 – 15,394,318 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 70.00 |
Mean single sequence MFE | -31.28 |
Consensus MFE | -15.45 |
Energy contribution | -15.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.28 |
Mean z-score | -1.55 |
Structure conservation index | 0.49 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.614977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15394228 90 - 20766785 GAU------------AAGGAAGAGGAUGAGGAG------UUCCAGUGCGGCUGCACCUGCGAGUUAAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACACCA ..(------------(((....(((.(((((((------.....((((((..(((.((((........))))..)))....)))))))))))))))).))))...... ( -31.40) >DroPse_CAF1 228761 108 - 1 GCAAGCAUGACCCCCAACUCCGAAGAGGAGGAGGCGCUCUUUCAGUGUCGCUGCACCUGCGAGAUCAAGCAGCGCGCCUUCCCUCAUCUCUUCACCUACUUGGCUCCC .((((..((.....)).....((((((((((((((((.((((..((.((((.......)))).))..)).)).))))))..))))..)))))).....))))...... ( -34.10) >DroEre_CAF1 186996 90 - 1 GAG------------AACGCCGAGGAGGAGGAC------UUCCAGUGCGGCUGCACCUGCGAACUUAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACGCCA ...------------..((.((((.(((.((..------..)).((((((..(((.((((........))))..)))....)))))).......))).)))).))... ( -28.80) >DroYak_CAF1 193274 90 - 1 GAG------------AACGUCGAGGAUGAGGAC------UUCCAGUGCGGCUGCACCUGCGAGUUAAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACGCCA ...------------..(((((((..((((((.------.....((((((..(((.((((........))))..)))....)))))).))))))....)))))))... ( -31.40) >DroAna_CAF1 177300 93 - 1 GAG------------GCUGCUGAGGAGAAGGACGCCUUGUCCAAAUGUUGCUGCAUGUGCAAAUACAA---GCGUGAUUUUCCUCACCUCUUCACUUACCUGGCACCC (((------------(....(((((((((..((((.((((.......((((.......))))..))))---))))..))))))))))))).................. ( -27.90) >DroPer_CAF1 188716 108 - 1 GCAAGCAUGACCCCCAACUCCGAAGAGGAGGAGGCGCUCUUCCAGUGCCGCUGCACUUGCGAGAUCAAGCAGCGCGCCUUCCCUCAUCUCUUCACCUACUUGGCUCCC .((((..((.....)).....((((((((((((((((......(((((....)))))(((........)))..))))))..))))..)))))).....))))...... ( -34.10) >consensus GAG____________AACGCCGAGGAGGAGGAC______UUCCAGUGCGGCUGCACCUGCGAGUUCAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACACCA .....................(((((((.(((............((((....))))((((........))))........)))...)))))))............... (-15.45 = -15.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:10 2006