Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,660,567 – 2,660,658 |
Length | 91 |
Max. P | 0.510964 |
Location | 2,660,567 – 2,660,658 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -15.75 |
Consensus MFE | -9.62 |
Energy contribution | -10.25 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.12 |
Mean z-score | -1.88 |
Structure conservation index | 0.61 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2660567 91 - 20766785 CCUCCAUUAGAUACCACUAAUUCACGGUCUGAGAACUACUCCCAUUUAAAUGGUUUCAAAUCCGACAGACCCACGAAUUGUUUUUAACCCU .................((((((..((((((..........((((....))))..((......))))))))...))))))........... ( -14.10) >DroSec_CAF1 93768 91 - 1 CUUCCAUUAGAUACCACUAAUGCUCGGUCUGAAAUCUACUCCCAUUUAAAUGGUUUCAAAUCGGACAGACCCACGAAUUGUUUUUAACACU ....((((((......))))))...((((((..........((((....)))).(((.....))))))))).................... ( -15.10) >DroSim_CAF1 91840 91 - 1 CCUCCAUUAGAUACCACUAAUGCACGGUCUGAAAACUAAUCCCAUUUAAAUGGUUUCAAAUCGGACAGACCCACGAAUUGUUUUUAACCCU ....((((((......))))))...((..(((((((...((((((....)))).........((......))..))...)))))))..)). ( -15.60) >DroYak_CAF1 89452 87 - 1 CCUUCAUUAGAUACCAAUAGUAAACGGGUUGAAAACUACA-CCAUGUUAAUGGUUU---ACCCGUCAGACCCACGAAUAGUUUAUAACCCU .........................((((((.((((((.(-((((....)))))..---...(((.......)))..)))))).)))))). ( -18.20) >consensus CCUCCAUUAGAUACCACUAAUGCACGGUCUGAAAACUACUCCCAUUUAAAUGGUUUCAAAUCCGACAGACCCACGAAUUGUUUUUAACCCU ....((((((......))))))...((((((..........((((....))))............)))))).................... ( -9.62 = -10.25 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:23 2006