Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,297,682 – 1,297,778 |
Length | 96 |
Max. P | 0.705282 |
Location | 1,297,682 – 1,297,778 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.53 |
Mean single sequence MFE | -19.05 |
Consensus MFE | -10.59 |
Energy contribution | -11.40 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.09 |
Mean z-score | -1.75 |
Structure conservation index | 0.56 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1297682 96 + 20766785 AAGAUUGUACUCAUUUGGUAAUCCAAAGGCAUAAUAGACC------------------------CAUUAAAAUAUAAGAACCGUCGUGAUCAAAGGAGUAAAGUAAAAACGCUUUAAUAU ..(((..(.....(((((....))))).........(((.------------------------..(((.....))).....))))..))).......((((((......)))))).... ( -11.10) >DroSec_CAF1 25625 89 + 1 AGGACUAUACUCAUUUGGUAAUCCAAAGGCACAAUUUACC------------------------CUUUAAAAUAUGAGAACUGUCGUGAUCAAAUGAGUAAAGUAAAAACGCU------- ...(((.((((((((((((.....(((((..........)------------------------))))....(((((......))))))))))))))))).))).........------- ( -20.70) >DroSim_CAF1 29823 96 + 1 AAGACUAUACUCAUUUGGUAAUCCAAAGGCACAAUUGACC------------------------CUUUAAAAUAUGAUAACUGUCGUGAUCAAAUGAGUAAAGUAAAAACGCUUUAAGGU ...(((.((((((((((((.....(((((..(....)..)------------------------))))....((((((....)))))))))))))))))).)))................ ( -22.40) >DroEre_CAF1 34610 119 + 1 CAGAUUAUACUCCUUUGUUAAUCCAAAGGAACAAUUCAACUGAUAAUUCAAAUAUGGAUUGUGCUCUUUAAAUAUGAGAUCUGUCGUGAUUAAAUGAUUA-AGUAAACUCACUUUAAAAU ((((((....(((((((......)))))))((((((((..(((....)))....))))))))...............))))))((((......))))...-................... ( -22.00) >consensus AAGACUAUACUCAUUUGGUAAUCCAAAGGCACAAUUGACC________________________CUUUAAAAUAUGAGAACUGUCGUGAUCAAAUGAGUAAAGUAAAAACGCUUUAA_AU ...(((.((((((((((((...((...))...........................................(((((......))))))))))))))))).)))................ (-10.59 = -11.40 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:40 2006