Locus 4697

Sequence ID 2R_DroMel_CAF1
Location 15,383,133 – 15,383,244
Length 111
Max. P 0.818836
window7561

overview

Window 1

Location 15,383,133 – 15,383,244
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 84.77
Mean single sequence MFE -36.68
Consensus MFE -28.08
Energy contribution -28.58
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.77
SVM decision value 0.67
SVM RNA-class probability 0.818836
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15383133 111 + 20766785
CGGCGGGCAUCACAGCACAAGAUGUUGCGAAUCGUCAUGAGACCGACGACCCUGGCCAUAGUGUCAAGUGCUUUUUCCGCUGUUUUCUAGAAAACAUUGGCAUUAUCGCCG
((((((((.((.(((((.....))))).)).(((((........))))).....)))((((((((((..((.......))((((((....))))))))))))))))))))) ( -36.90)
>DroSec_CAF1 188871 111 + 1
CGGCGGGCAUCACAGCACAAGAUGUUGCGAACCGUCAUGAGUCAGACGACCCUGGCCAUAGUGUCAAGUGCUUUUUCCGCUGUUUUCUGGAAAACAUUGGCAUUAUCGCCG
((((((((.((.(((((.....))))).))..((((........))))......)))((((((((((.((..(((((((........)))))))))))))))))))))))) ( -37.20)
>DroSim_CAF1 167059 111 + 1
CGGCGGGCAUCACAGCACAAGAUGUUGCGAAUCGUCAUGAGACAGACGACCCUGGCCAUAGUGUCAAGUGCUUUUUCCGCUGCUUUCUGGAAAACAUUGGCAUUAUCGCCG
((((((((.((.(((((.....))))).)).(((((........))))).....)))((((((((((.((..(((((((........)))))))))))))))))))))))) ( -38.50)
>DroEre_CAF1 176094 99 + 1
AGGUGGGCAUCACAGCACAAGAUGUUGCGGAUCGUCAUUUGAACGACGAUCCUGGCGAUGGUGUCAAG-----------CUGUU-UCUUGAAAACAUUGGCAUUAUAGCCG
..(..(.((((.........)))))..)((((((((........)))))))).(((.((((((((((.-----------.((((-(.....))))))))))))))).))). ( -35.90)
>DroYak_CAF1 181839 111 + 1
AUUCGGGAGUCACAGCACAUGAUGUUGCGGAUCGUUAUGUGAACGACGAUCCUGGCGUUAGUGUGAAGUGCUUUUUCCGCUGUUUUUUUGAAAAAAUUGGCAUUAUGGCCG
...((((((.(((..((((((((((((.(((((((..(....)..))))))))))))))).))))..)))...))))))...................(((......))). ( -34.90)
>consensus
CGGCGGGCAUCACAGCACAAGAUGUUGCGAAUCGUCAUGAGACCGACGACCCUGGCCAUAGUGUCAAGUGCUUUUUCCGCUGUUUUCUGGAAAACAUUGGCAUUAUCGCCG
....(((..((.(((((.....))))).)).(((((........)))))))).(((.(((((((((((((.......)))((((((....)))))))))))))))).))). (-28.08 = -28.58 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:05 2006