Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,382,260 – 15,382,359 |
Length | 99 |
Max. P | 0.983394 |
Location | 15,382,260 – 15,382,359 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 89.90 |
Mean single sequence MFE | -41.83 |
Consensus MFE | -37.95 |
Energy contribution | -39.40 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.03 |
Mean z-score | -4.02 |
Structure conservation index | 0.91 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15382260 99 + 20766785 UGCUGCCGUGCUGCUGCUGUGCAGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCAGCAGCAG ........((((((((((((((.((((((((.((((.((((...((......))...)))).))))))))))))...(....))).)))))))))))). ( -44.80) >DroSec_CAF1 187978 99 + 1 UACUGCCGUGCUGCUGCUGUGCAGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCGGCAGCAG ........((((((((((((((.((((((((.((((.((((...((......))...)))).))))))))))))...(....))).)))))))))))). ( -44.10) >DroYak_CAF1 180960 88 + 1 UG-----------CUGCUGUGCUGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCGGCAACAG ((-----------(((((((..(((((((((.((((.((((...((......))...)))).))))))))))))).((....))..))))))))).... ( -36.60) >consensus UGCUGCCGUGCUGCUGCUGUGCAGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCGGCAGCAG ........((((((((((((((.((((((((.((((.((((...((......))...)))).))))))))))))...(....))).)))))))))))). (-37.95 = -39.40 + 1.45)
Location | 15,382,260 – 15,382,359 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.90 |
Mean single sequence MFE | -35.75 |
Consensus MFE | -27.33 |
Energy contribution | -30.00 |
Covariance contribution | 2.67 |
Combinations/Pair | 1.07 |
Mean z-score | -3.54 |
Structure conservation index | 0.76 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15382260 99 - 20766785 CUGCUGCUGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCUGCACAGCAGCAGCACGGCAGCA ((((((.(((((((((.((.(((((((....(((((((.....................))))))).....)))))))))..))))))))))))))).. ( -39.50) >DroSec_CAF1 187978 99 - 1 CUGCUGCCGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCUGCACAGCAGCAGCACGGCAGUA .(((((((((((((((.((.(((((((....(((((((.....................))))))).....)))))))))..))))))))..))))))) ( -38.70) >DroYak_CAF1 180960 88 - 1 CUGUUGCCGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCAGCACAGCAG-----------CA ((((((..((((((((......(((((((..(((......................))).)))))))....)))))))).))))))-----------.. ( -29.05) >consensus CUGCUGCCGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCUGCACAGCAGCAGCACGGCAGCA .(((((((((((((((.((...((.(((....((((((.....................))))))((....))))).)).))))))))))..))))))) (-27.33 = -30.00 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:03 2006