Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,364,644 – 15,364,739 |
Length | 95 |
Max. P | 0.668321 |
Location | 15,364,644 – 15,364,739 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -17.12 |
Consensus MFE | -8.51 |
Energy contribution | -9.04 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.50 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15364644 95 - 20766785 AAUCAAUUGCUGAGAACUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCACAUAACAAAUGGCCCAUAAUCGGGC--------CACAGCG-AAAU ......((((((....((((.....)))).......................................((((((......))))--------)))))))-)... ( -24.10) >DroPse_CAF1 198420 92 - 1 AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCGCCAAACAAAUGGCCCAUAAGCGAGC-----------AGCA-AAAU ......((((((.....(((........(((...(((........)))...)))....((((......))))......)))..)-----------))))-)... ( -18.20) >DroGri_CAF1 193552 82 - 1 AAUCAAUUGUUGAGAAGUGCAAUUAGCAGCAAAAGAUAAAAAUAAAUUCACA-----AACAAAACAAAUGGUCCAAC----CAC--------CCAACAA----- .(((..((((((..((......))..))))))..)))...............-----...........(((.....)----)).--------.......----- ( -9.10) >DroWil_CAF1 340852 87 - 1 AAUCAAUUGCUGAGAAGUGCAAUUAGCAGGAAAAGAUAAAAAUAAAUUAAAGGCCUCCGCAAAACAAAUGGCCCAUAAGCG----------------CA-AAAC .(((..(((((((.........))))))).....)))..............((((..............))))........----------------..-.... ( -12.04) >DroAna_CAF1 143555 104 - 1 AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCGAAGAUAAAAAUAAAUUAAAGGCCUCCGCAUAACAAAUGGCCCAUAAGCGGACAGCAACUGCACAGCACAAAU .......(((((.(.(((((........(((...(((........)))...))).(((((..................)))))..)).))).).)))))..... ( -21.07) >DroPer_CAF1 157323 92 - 1 AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCGCCAAACAAAUGGCCCAUAAGCGAGC-----------AGCA-AAAU ......((((((.....(((........(((...(((........)))...)))....((((......))))......)))..)-----------))))-)... ( -18.20) >consensus AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCGCAAAACAAAUGGCCCAUAAGCGAGC___________AGCA_AAAU ......(((((((.........)))))))......................((((..............))))............................... ( -8.51 = -9.04 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:00 2006