Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,363,902 – 15,364,012 |
Length | 110 |
Max. P | 0.716125 |
Location | 15,363,902 – 15,364,012 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.74 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -19.22 |
Energy contribution | -20.30 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.08 |
Mean z-score | -2.15 |
Structure conservation index | 0.69 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15363902 110 - 20766785 AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA-------GUUCGCCACUCGCACACAUAUGCUGCUUUCCUUUCAGAA-A-- ......(((((((((................(((((((.((((.....)))).)))))))(((((.(((.-------....)))))).)).......)))))))))..........-.-- ( -29.60) >DroPse_CAF1 197563 116 - 1 AAAUAAAGAGCAGCAGAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUCGACAGUCCGACAGUCGCACACAUAUGCUGCCUAGCACUCCACU---- ......((.((((((...............((((((((.((((.....)))).))))))))..((((((.((((......)))).)))).)).....))))))))...........---- ( -31.70) >DroWil_CAF1 339310 106 - 1 AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGCCA-------GUUCGGCACUCGCACACACAUGCUGCAUGG----AAGAG-A-- .........((((((................(((((((.((((.....)))).)))))))(((((.(((.-------....)))))).)).......))))))....----.....-.-- ( -27.60) >DroMoj_CAF1 233083 106 - 1 AAGUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA-------GUUCGACAGGCACACACACACACA------CACGCGCGG-ACU ..................(((..........(((((((.((((.....)))).)))))))((.(((((..-------..)))))..)).............------.....))).-... ( -19.60) >DroAna_CAF1 142709 111 - 1 AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA-------GUUCGCCACUCGCACACAUAUGCUGCCUGCCACUCCUUACU-- ......((.((((((................(((((((.((((.....)))).)))))))(((((.(((.-------....)))))).)).......)))))))).............-- ( -27.80) >DroPer_CAF1 156466 116 - 1 AAAUAAAGAGCAGCAGAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUCGACAGUCCGACAGUCGCACACAUAUGCUGCCUAGCACUCCACU---- ......((.((((((...............((((((((.((((.....)))).))))))))..((((((.((((......)))).)))).)).....))))))))...........---- ( -31.70) >consensus AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA_______GUUCGACACUCGCACACAUAUGCUGCCUAGCACUCCAAA_A__ .........((((((...............((((((((.((((.....)))).))))))))..((((((........).))))).............))))))................. (-19.22 = -20.30 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:59 2006