Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,659,583 – 2,659,675 |
Length | 92 |
Max. P | 0.957970 |
Location | 2,659,583 – 2,659,675 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -25.93 |
Consensus MFE | -16.07 |
Energy contribution | -17.10 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.33 |
Mean z-score | -1.98 |
Structure conservation index | 0.62 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2659583 92 + 20766785 UA-AUGCCCAGCUGAGA-ACUAAUCCU--UUUCAAUUCU----CCUAGUCAUUCUUCUUGGGGUGUGGAUAUCCGCUCCUGAAGGUCUGGGUAACACGAU ..-.(((((((.(((((-(.......)--))))).....----............((((.(((.((((....)))).))).)))).)))))))....... ( -27.40) >DroSec_CAF1 92782 94 + 1 UA-AUGCCCAGCUGAGA-ACUAAUCCAAAUUUCAAUUCU----CCUAGUCAUUCUUCUUGGGGUGUGGAUCUCCGCACCUGGAGGUCUGGCAAACACCAU ..-.((((..((.((((-(................))))----)............(((.((((((((....)))))))).)))))..))))........ ( -27.19) >DroSim_CAF1 90854 94 + 1 UA-AUGCCCAGCUGAGA-ACUAAUCCAAAUUUCAAUUCU----CCUAGUCAUUCUUCUUGGGGUGUGGAUCUCCGCACCUGGAGGUCUGGGAAACACCAU ..-...(((((..((((-(................))))----)...........((((.((((((((....)))))))).)))).)))))......... ( -28.69) >DroEre_CAF1 91430 93 + 1 UAGAAGCCCAGCUGAAU-ACUAAUCCA--CUUCAAUUCU----UUCAGUCAUAUUUCUUGGGGUGUGGAUCUCCGCACCUGGGGGCCUGGGAAACACGAU ......((((((((((.-.........--..........----))))).......((((.((((((((....)))))))).)))).)))))......... ( -28.45) >DroYak_CAF1 88452 96 + 1 CA-AAGCCCAACUGAAA-ACUAAUCCC--AUUCAAUUUUCAAAUAUAGUAAUAUUUCUUGGGGUGUGGAUCUCGGCACCUGGAGGCCUGGGCAACACGAU ..-..(((((..(((((-(........--......))))))..............((((.((((((.(....).)))))).))))..)))))........ ( -25.84) >DroAna_CAF1 95200 88 + 1 UA-ACUC-CAGAAGAAUCUCUAACCU----UU--CUUUC----CAAAGUUCUGUUUCUAGGAGCCCUGAUCUCCGCCCCCGUUGGGCAUGGCAACACGAU ..-(((.-..((((((..........----))--)))).----...)))((((((.(((((((.......))))((((.....)))).))).)))).)). ( -18.00) >consensus UA_AUGCCCAGCUGAAA_ACUAAUCCA__UUUCAAUUCU____CCUAGUCAUUCUUCUUGGGGUGUGGAUCUCCGCACCUGGAGGUCUGGGAAACACGAU ......(((((..((((.((((.......................))))...))))(((.((((((((....)))))))).)))..)))))......... (-16.07 = -17.10 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:22 2006