Locus 4689

Sequence ID 2R_DroMel_CAF1
Location 15,347,333 – 15,347,429
Length 96
Max. P 0.639567
window7549

overview

Window 9

Location 15,347,333 – 15,347,429
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -15.60
Consensus MFE -14.43
Energy contribution -14.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.93
SVM decision value 0.22
SVM RNA-class probability 0.639567
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15347333 96 + 20766785
AUACUUUAUAUAUAUCUACAUAUAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAUUAUACGAGUAAAUGUUUAACAACUGCCUAUAGAAA
.(((((((((((((((((.(((((((..((((....))))..))))))).)).).))))).)))).)))))......................... ( -16.10)
>DroSim_CAF1 131356 96 + 1
AUACUUUAUAUAUAUCUACAUAAAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAUUAUACGAGUAAAUGUUUAACAACUGCCUAUAGAAA
.((((((((((((((...(.((.((((((((.(....)...)))))))).)).).))))).)))).)))))......................... ( -14.20)
>DroEre_CAF1 139640 94 + 1
AUACUUUAUAUAUAU--ACAUAUAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAUUAUACGAGUAAAUGUUUAACAACUGCCUAUAGAAA
.((((((((((((((--.(.((.((((((((.(....)...)))))))).)).).))))).)))).)))))......................... ( -16.50)
>consensus
AUACUUUAUAUAUAUCUACAUAUAUGUAUGCUCGCAAGUACGCAUAUAUCUACGCAUAUAUUAUACGAGUAAAUGUUUAACAACUGCCUAUAGAAA
.((((((((((((((...(.((.((((((((.(....)...)))))))).)).).))))).)))).)))))......................... (-14.43 = -14.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:54 2006