| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,342,743 – 15,342,863 |
| Length | 120 |
| Max. P | 0.536000 |
| Location | 15,342,743 – 15,342,863 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -39.23 |
| Consensus MFE | -26.22 |
| Energy contribution | -25.92 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.536000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15342743 120 + 20766785 ACCUGCAGCAGAACGAACUCUACGAGCUUCCCAAAGGACUGUUCCAUCGCCUGGAGCAACUUUUGGUAGUGGAUUUGUCCGGUAACCAGUUGACUUCCAACCACGUGGAUAACACCACCU ....((.(.(((......))).)..))...(((((((..(((((((.....))))))).)))))))..((((..((((((((...)).((((.....)))).....))))))..)))).. ( -31.60) >DroVir_CAF1 188790 120 + 1 ACUUGCAGAACAAUGAACUGUAUGAGCUGCCCAAGGGGCUGUUUCAUCGUUUGGAGCAGCUGCUUGUGGUCGAUUUGUCGGGCAAUCAAUUGACCUCGAAUCAUGUCGAUAAUACAACAU ....((((.(((......))).....))))(((((.((((((((((.....)))))))))).)))).)((((((.((((((((((....))).)).)))..)).)))))).......... ( -37.20) >DroGri_CAF1 160509 120 + 1 ACCUGCAGCAAAACGAGCUCUACGAGCUGCCCAAGGGUCUGUUCCAUCGGCUGGAACAGUUGCUUGUGGUUGACUUGUCGGGCAAUCAGCUGACCUCGAAUCAUGUGGAUAACACAACGU .....((((.......((((.((((((.(((((((.(.((((((((.....)))))))).).)))).))).).))))).)))).....))))...........((((.....)))).... ( -40.50) >DroWil_CAF1 291940 120 + 1 AUUUGCAGCACAAUGAGUUGUACGAACUGCCCAAGGGUCUGUUCCAUCGUCUGGAGCAAUUGCUGGUGGUUGAUCUGUCGGGCAAUCAGUUAACCUCCAACCAUGUGGACAAUACAACAU ................((((((.....((.(((..(((.(((((((.....))))))).....(((.((((((.(((.........))))))))).))))))...))).)).)))))).. ( -32.90) >DroMoj_CAF1 195629 120 + 1 ACCUGCAGAACAAUGAGCUCUACGAGCUACCCAAGGGCCUGUUCCAUCGGCUGGAGCAGCUGCUCGUGGUGGAUCUGUCGGGCAACCAGCUGACCUCCAACCACGUGGACAACACCACCU ....((((.......(((((...))))).((....)).((((((((.....))))))))))))..((((((((((.((.((....)).)).))..))).)))))((((......)))).. ( -44.40) >DroAna_CAF1 121286 120 + 1 AUCUGCAGCACAACGAGCUGUACGAGCUGCCACGCGGCCUGUUCCAUCGGCUGGAGCAGCUGCUGGUGGUGGACUUGUCGGGCAACCAACUGACCUCCAACCAUGUGGACAACACCACUU .((((((((.......)))))).))((..(((.(((((.(((((((.....)))))))))))))))..))(((...(((((........))))).)))......((((......)))).. ( -48.80) >consensus ACCUGCAGCACAACGAGCUCUACGAGCUGCCCAAGGGCCUGUUCCAUCGGCUGGAGCAGCUGCUGGUGGUGGAUUUGUCGGGCAACCAGCUGACCUCCAACCAUGUGGACAACACAACAU ....((((.......((((.....))))(((....)))((((((((.....))))))))))))..((((((((...(((((........))))).))).)))))(((.....)))..... (-26.22 = -25.92 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:50 2006