Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,323,242 – 15,323,332 |
Length | 90 |
Max. P | 0.977314 |
Location | 15,323,242 – 15,323,332 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -17.80 |
Consensus MFE | -15.22 |
Energy contribution | -15.22 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.85 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15323242 90 - 20766785 CCCUGUUCACCGU-------CCACUGUCCACUCGGGUGGACAAUUGCAAUUGCUUGGCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACCC----AC--AC-- .............-------....(((((((....)))))))(((((...(((...)))((((((........)))))).)))))........----..--..-- ( -15.80) >DroPse_CAF1 154786 82 - 1 CCCU---------------------GUCCACUCGGGUGGACAAUUGCAAUUGCUUGCCAGUAAUUCUCAAUUUAAUUAUAGUAAUACACACACACUCACACAC-- ....---------------------((((((....))))))(((((.(((((((....)))))))..)))))...............................-- ( -15.00) >DroWil_CAF1 257267 96 - 1 --------CCCAGGCACUGGCC-UUGUCCACUCGUGUGGACAAUUGCAAUUGCUUGGCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACAACCAGAGAAAUGA --------.(((((((...((.-((((((((....))))))))..))...)))))))..((((((........)))))).......................... ( -26.00) >DroYak_CAF1 119814 101 - 1 CCCUGUUCACCGUCCACAGUCCACUGUCCACUCGGGUGGACAAUUGCAAUUGCUUGGCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACCCUCACACUC--AC-- ...((((((((((..((((....))))..))...))))))))(((((...(((...)))((((((........)))))).)))))..............--..-- ( -18.90) >DroAna_CAF1 102995 80 - 1 UCCU---------------------GUCCACUCGGGUGGACAAUUGCAAUUGCUGGCCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACUCACACUC--AC-- ....---------------------((((((....))))))(((((.(((((((....)))))))..)))))...........................--..-- ( -16.10) >DroPer_CAF1 113756 74 - 1 CCCU---------------------GUCCACUCGGGUGGACAAUUGCAAUUGCUUGCCAGUAAUUCUCAAUUUAAUUAUAGUAAUACACACAC--------AC-- ....---------------------((((((....))))))(((((.(((((((....)))))))..))))).....................--------..-- ( -15.00) >consensus CCCU_____________________GUCCACUCGGGUGGACAAUUGCAAUUGCUUGCCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACACACACAC__AC__ .........................((((((....))))))(((((.(((((((....)))))))..)))))................................. (-15.22 = -15.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:39 2006