Locus 468

Sequence ID 2R_DroMel_CAF1
Location 2,657,700 – 2,657,791
Length 91
Max. P 0.500000
window892

overview

Window 2

Location 2,657,700 – 2,657,791
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 83.77
Mean single sequence MFE -24.13
Consensus MFE -17.10
Energy contribution -17.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.71
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2657700 91 - 20766785
CUGACCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGCCGGUGAGAUGG-AGCUCUGUGGCAGCGGC
.....(((((.....)))))(((((((.((((..((((.....))))...)))))))))))((((.((..((((-....))))..)).)))) ( -28.90)
>DroEre_CAF1 89650 90 - 1
CUGACCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGCCGGGCCG-CAA-CGCUCUGUGGCAGCGAC
.....(((((.....)))))(((((((.((((..((((.....))))...)))))))))))((...((((-((.-.....)))))).))... ( -28.40)
>DroWil_CAF1 120120 74 - 1
----CCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGUUGGACCG-CAA-AGC------------UC
----.(((((.....)))))(((((((.((((..((((.....))))...))))))))))).........-...-...------------.. ( -17.10)
>DroYak_CAF1 86629 76 - 1
CUGACCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGCCGGGCCG-CAA-GGC--------------
(((..(((((.....)))))(((((((.((((..((((.....))))...)))))))))))..)))(((.-...-)))-------------- ( -25.00)
>DroAna_CAF1 93418 78 - 1
CUGACCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGCCCGACCG-CAA-AGC------------GC
.....(((((.....)))))(((((((.((((..((((.....))))...))))))))))).......((-(..-.))------------). ( -17.90)
>DroPer_CAF1 106678 83 - 1
CUGACCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGCCGGGCCG-CAAAAGCCC--------UGGC
.....(((((.....)))))(((((((.((((..((((.....))))...)))))))))))(((((((..-.....))))--------.))) ( -27.50)
>consensus
CUGACCGUUCUGAUUGAAUGAUUUCACUGAUCGAGACAAAACAUGUUAAAGAUCGUGAGAUGCCGGGCCG_CAA_AGC____________GC
.....(((((.....)))))(((((((.((((..((((.....))))...)))))))))))............................... (-17.10 = -17.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006