Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,312,583 – 15,312,675 |
Length | 92 |
Max. P | 0.544749 |
Location | 15,312,583 – 15,312,675 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.69 |
Mean single sequence MFE | -21.86 |
Consensus MFE | -13.88 |
Energy contribution | -14.77 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.21 |
Mean z-score | -1.39 |
Structure conservation index | 0.63 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15312583 92 - 20766785 -----UUGCCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCA--------GCCA -----.........(.(((((.(((((......)))))(((((((......)))))))...........(((((....)))))..---....))))--------).). ( -24.20) >DroSim_CAF1 95565 92 - 1 -----UUGCCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCA--------GCCA -----.........(.(((((.(((((......)))))(((((((......)))))))...........(((((....)))))..---....))))--------).). ( -24.20) >DroEre_CAF1 104658 92 - 1 -----UUGCCCAUCGCCUGGAAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCA--------GCCA -----.........(.((((..(((((......)))))(((((((......)))))))...........(((((....)))))..---.....)))--------).). ( -20.70) >DroYak_CAF1 108437 100 - 1 -----UUGGCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCACCCAGCCAACCA -----(((((.......((((.(((((......)))))(((((((......)))))))...........(((((....)))))..---))))........)))))... ( -26.06) >DroAna_CAF1 91351 81 - 1 -----UUGUCCAUUGCCUCGGAGAAAAUUAAACUUUUCGCUCGGCU-----------CACAAAAACAUUUUAUGCACUUAUGACG---CCCAGUCA--------ACCA -----((((.....(((..((.(((((......))))).)).))).-----------.))))..................((((.---....))))--------.... ( -11.90) >DroPer_CAF1 102702 108 - 1 AACACUCGCCUUUGGCCUCGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUACGGAGUGGAAAAACGUUUGCUGCACUUAUGACGCCGCCCGCUCAGCCGCCCGCUCA .......((...((((..(((........(((((((((((((((........)))))))))))...))))((.((.........)).)))))....))))...))... ( -24.10) >consensus _____UUGCCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA___CCCACCCA________GCCA ..............((.((((((((((......)))))(((((((......))))))).........))))).))................................. (-13.88 = -14.77 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:29 2006