Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,310,059 – 15,310,157 |
Length | 98 |
Max. P | 0.581231 |
Location | 15,310,059 – 15,310,157 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 86.97 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -17.32 |
Energy contribution | -17.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.50 |
Structure conservation index | 0.78 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15310059 98 + 20766785 UUUGUCGCACAGCAUGGGCUCCUGCCGAUGGAAAUGCUCCUACUCCACC------CCCACAAUCCUGAGGAGGACACCUCAUCCUGCCACGCAUCCAACUCCGC ...((.(((...(((.(((....))).)))((..((.((((.(((....------...........))).))))))..))....))).)).............. ( -19.86) >DroSec_CAF1 115871 98 + 1 UUUGUCGCACAGCAUGGGCUCCUGCCCAUGGAAAUGCUCCUACUCCACCC-----CCCACAAUCCUGAGGAGGACUCCUCAUCCUGCCACGCAUCCAACUCCU- ...((.(((...(((((((....)))))))....................-----..........((((((....))))))...))).)).............- ( -25.10) >DroSim_CAF1 93011 90 + 1 UUUGUCGCACAGCAUGGGCUCCUGCCCAUGGAAAUGCUCCUACUCCACC------CCCACAAUCCUGAGGAGGACUCCUCAUCCUGCCACGCAUCC-------- ...((.(((...(((((((....)))))))...................------..........((((((....))))))...))).))......-------- ( -25.10) >DroEre_CAF1 102175 101 + 1 UUUGUCGCACAGCAUGGGCUCCUGCCCAUGGAAAUGCCCCUACUCCAGCCACCCACCCAGAAUCCUGAG---GACUCCCCAUCCUGCCACGCAUCCAACUCCGC ...((.(((...(((((((....))))))).........................(((((....))).)---)...........))).)).............. ( -21.50) >DroYak_CAF1 105861 96 + 1 UUUGUCGCACAGCAUGGGCUCCUGCCUAUGGAAAUGCACCCACUCCACCC-----CCCACAAUCCUGAG---UACUCCUCAUCCUGUCGAGCAUCCAACUCCGC ..(((((.(((((((((((....)))))))....................-----..........((((---.....))))..))))))).))........... ( -19.80) >consensus UUUGUCGCACAGCAUGGGCUCCUGCCCAUGGAAAUGCUCCUACUCCACCC_____CCCACAAUCCUGAGGAGGACUCCUCAUCCUGCCACGCAUCCAACUCCGC ..(((.(((...(((((((....)))))))...................................(((((......)))))...))).)))............. (-17.32 = -17.88 + 0.56)
Location | 15,310,059 – 15,310,157 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 86.97 |
Mean single sequence MFE | -35.26 |
Consensus MFE | -24.18 |
Energy contribution | -24.70 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.86 |
Structure conservation index | 0.69 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581231 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15310059 98 - 20766785 GCGGAGUUGGAUGCGUGGCAGGAUGAGGUGUCCUCCUCAGGAUUGUGGG------GGUGGAGUAGGAGCAUUUCCAUCGGCAGGAGCCCAUGCUGUGCGACAAA .....((((.(((((((((((..(((((......)))))...))))...------(((((((.........)))))))(((....)))))))).)).))))... ( -33.40) >DroSec_CAF1 115871 98 - 1 -AGGAGUUGGAUGCGUGGCAGGAUGAGGAGUCCUCCUCAGGAUUGUGGG-----GGGUGGAGUAGGAGCAUUUCCAUGGGCAGGAGCCCAUGCUGUGCGACAAA -.....(((..((((..((....((((((....))))))........((-----..(((.........)))..))((((((....))))))))..)))).))). ( -36.20) >DroSim_CAF1 93011 90 - 1 --------GGAUGCGUGGCAGGAUGAGGAGUCCUCCUCAGGAUUGUGGG------GGUGGAGUAGGAGCAUUUCCAUGGGCAGGAGCCCAUGCUGUGCGACAAA --------...((((..(((...((((((....)))))).....((((.------.(((.........)))..))))((((....)))).)))..))))..... ( -36.30) >DroEre_CAF1 102175 101 - 1 GCGGAGUUGGAUGCGUGGCAGGAUGGGGAGUC---CUCAGGAUUCUGGGUGGGUGGCUGGAGUAGGGGCAUUUCCAUGGGCAGGAGCCCAUGCUGUGCGACAAA ......(((..((((..(((..((((..((((---((....((((..(.(....).)..)))).))))).)..))))((((....)))).)))..)))).))). ( -39.50) >DroYak_CAF1 105861 96 - 1 GCGGAGUUGGAUGCUCGACAGGAUGAGGAGUA---CUCAGGAUUGUGGG-----GGGUGGAGUGGGUGCAUUUCCAUAGGCAGGAGCCCAUGCUGUGCGACAAA (((.((((((..((((.((((..((((.....---))))...)))).((-----..(((.(.....).)))..))........))))))).))).)))...... ( -30.90) >consensus GCGGAGUUGGAUGCGUGGCAGGAUGAGGAGUCCUCCUCAGGAUUGUGGG_____GGGUGGAGUAGGAGCAUUUCCAUGGGCAGGAGCCCAUGCUGUGCGACAAA ...............(.((((..(((((......)))))...)))).)................(..((((...(((((((....)))))))..))))..)... (-24.18 = -24.70 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:28 2006