| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,309,833 – 15,309,941 |
| Length | 108 |
| Max. P | 0.711407 |
| Location | 15,309,833 – 15,309,941 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 84.28 |
| Mean single sequence MFE | -44.05 |
| Consensus MFE | -30.67 |
| Energy contribution | -32.47 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15309833 108 + 20766785 AGCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCCUU---GGUGGGAGCACACUGACGAAAGGGGUUGUGCGCGAUCUGGGUGA ..((((((..(((((((((((((((((...)))))))))))..-----(......)....))))))...---(((.(..(((((((..(....).)).))))).).))))))))). ( -44.30) >DroSec_CAF1 115648 108 + 1 AGCGCUCAAAGAUGCCGCGCGUGUGUUAUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCCUU---GGUGGGAGCACACUGACGAAAGGGGUUGUGCGCGAUCUGGGUGA ..((((((..(((((((((((((((((...)))))))))))..-----(......)....))))))...---(((.(..(((((((..(....).)).))))).).))))))))). ( -44.30) >DroSim_CAF1 92788 108 + 1 AGCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCCUU---GGUGGGAGCACACUGACGAAAGGGGUUGUGCGCGAUCUGGGUGA ..((((((..(((((((((((((((((...)))))))))))..-----(......)....))))))...---(((.(..(((((((..(....).)).))))).).))))))))). ( -44.30) >DroEre_CAF1 101937 105 + 1 AGCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAA-AAGGGGGUGGCGUCCUU---GGUGGGAGCACACCGACGAAAGGGGUUGUG--CGAUCUGGGUGA ..((((((..(((((((((((((((((...))))))))))).(-----(..-......))))))))...---...((..(((((((..(....).)).))))--)..)))))))). ( -45.60) >DroYak_CAF1 105579 109 + 1 AGCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA-----CAAAAAGGGGGUGGCGUCUUUGCAGGUGGGAGCACACCGACGAAAGGGGUUGUG--CGAUCUGGGUGA ..(((((((((((((((((((((((((...)))))))))))..-----(......)....))))))))))(((((....(((((((..(....).)).))))--).))))))))). ( -49.20) >DroAna_CAF1 88293 92 + 1 GGCUCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUCCAAUGGCUCACUAAAGGGGUGGCGCCCUU---G---GGUUCAUAUUUGGCA-UAGGGUU----------------- .(((((.....(((((((((((((.......))))))))((((.((((((((.....))))).))).))---)---)..........))))-)))))).----------------- ( -36.60) >consensus AGCGCUCAAAGAUGCCGCGCGUGUGUUUUGGACACGCGUGCAA_____CAAAAAGGGGGUGGCGUCCUU___GGUGGGAGCACACUGACGAAAGGGGUUGUG__CGAUCUGGGUGA ..((((((......(((((((((((((...))))))))))).............(..((((((.(((........))).)).))))..)....))(((((....))))))))))). (-30.67 = -32.47 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:26 2006