| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,286,764 – 15,286,863 |
| Length | 99 |
| Max. P | 0.984156 |
| Location | 15,286,764 – 15,286,863 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.85 |
| Mean single sequence MFE | -36.00 |
| Consensus MFE | -26.56 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15286764 99 + 20766785 CGAGAAAACUG--------AGAAUCCGAGAGCCCGAGGCGGGAACU------CAGAGUCGGCAAACGAGAAUCUCGAAUCGUUUUUGCAUGUGACAAUCAUAUGCAGGAGCUG (((((...(((--------((..(((....(((...))).))).))------)))..(((.....)))...)))))....(((((((((((((.....))))))))))))).. ( -36.80) >DroSec_CAF1 96036 105 + 1 CGAGAAAUCCG--------AGAAUCCGAGAGCCCGAGGCGUCAACUCAGACUCAGAGUCGGAAAACGAGAAUCUCGAAUCGUUUUUGCAUGUGACAAUCAUAUGCAGGAGCUG (((((..((((--------....(((((..(((...)))(((......)))......)))))...)).)).)))))....(((((((((((((.....))))))))))))).. ( -35.60) >DroSim_CAF1 72472 105 + 1 CGAGAAAUCCG--------AGAAUCCGAGAGCCCGAGGCGGCAACUCAGACUCAGAGUCGGAAAACGAGAAUCUCGAAUCGUUUUUGCAUGUGACAAUCAUAUGCAGGAGCUG (((((..((((--------....((((((.(((......)))..))).(((.....))))))...)).)).)))))....(((((((((((((.....))))))))))))).. ( -36.00) >DroEre_CAF1 80874 107 + 1 GGAGGAAUCCCAGAAUCCGAGAAUUCGAGAGCCCGAGGCGGGAACU------CAGAAUCGGAAAACGAGAAUCUCGAUUCGUUUUUGCAUGUGACAAUCAUACGCCGGAGCUG (((....)))..(((((.((((.((((((..((((...))))..))------)....(((.....)))))))))))))))((((..((.((((.....)))).))..)))).. ( -34.90) >DroYak_CAF1 85229 107 + 1 CGAGGAAUCCGAGAAACCAAGAAUCCGAGAGCCCGAGGCGGGAACU------CAGAAUUGGAAAACGAGAAUCUCGAUACGUUUUUGCAUGUGACAAUCAUAUGCAGGAGCUG (((((..((((.....((((...((.(((..((((...))))..))------).)).))))....)).)).)))))....(((((((((((((.....))))))))))))).. ( -36.70) >consensus CGAGAAAUCCG________AGAAUCCGAGAGCCCGAGGCGGGAACU______CAGAGUCGGAAAACGAGAAUCUCGAAUCGUUUUUGCAUGUGACAAUCAUAUGCAGGAGCUG .........................((((((((...)))..................(((.....)))...)))))....(((((((((((((.....))))))))))))).. (-26.56 = -26.80 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:21 2006