Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,281,588 – 15,281,684 |
Length | 96 |
Max. P | 0.911731 |
Location | 15,281,588 – 15,281,684 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -16.80 |
Energy contribution | -16.72 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.71 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15281588 96 + 20766785 GGGUCAGUUGACGCUGUUGUUUUCAUAAGUUGUUGCC----UUUGUU------------------GCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGGCA-AUGCAUGAAAAGUU-U (.(((....))).).....(((((((..(((((((..----......------------------((....)).(((((((((.....))).)))))))))))-))..)))))))...-. ( -20.80) >DroPse_CAF1 112616 73 + 1 GGGUCAGUUGACGC---------------------------UUUGUU------------------GCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGACA-AUGCAUGAAAAGUU-U ..(((....)))((---------------------------(((..(------------------(((((.((((((((((((.....))).)))))).))))-)))))...))))).-. ( -21.30) >DroSec_CAF1 90932 96 + 1 GGGCCAGUUGACGCUGUUGUUUUCAUAAGUUGUUGUC----UUUGUU------------------GCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGGCA-AUGCAUGAAAAGUU-U ....((((....))))...(((((((..((((((((.----......------------------((....))..((((((((.....))).)))))))))))-))..)))))))...-. ( -19.80) >DroWil_CAF1 171622 102 + 1 CAGUCAGUUGACGCUGUUGUUUUCAUAAGUUGCUGCUGCUGUUUGUU------------------GCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGACAAAUGCAUGGAAAACUUU ..(((....)))......(((((((((((..((....))..)))))(------------------((((((((((((((((((.....))).)))))).))))))))))..))))))... ( -30.70) >DroAna_CAF1 63665 114 + 1 GGGUCAGUUGACGCUAUUGUUCCCAUAAGUUGUUGGU----AUUGUUGGUGCUGGUGGGGGUGCUGCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGGCA-AUGCAUGAAAAGUU-U (((.((((.......))))..)))....((((((((.----.....((((((.((((((.(((((((....))...))))).)))))))))))))))))))).-..............-. ( -28.60) >DroPer_CAF1 71147 73 + 1 GGGUCAGUUGACGC---------------------------UUUGUU------------------GCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGACA-AUGCAUGAAAAGUU-U ..(((....)))((---------------------------(((..(------------------(((((.((((((((((((.....))).)))))).))))-)))))...))))).-. ( -21.30) >consensus GGGUCAGUUGACGCUGUUGUUUUCAUAAGUUGUUG______UUUGUU__________________GCAUUUGUUUUGGCAUGUUUAUUGCACUGUCAACGACA_AUGCAUGAAAAGUU_U ..(((....))).....................................................((((.(((((((((((((.....))).)))))).)))).))))............ (-16.80 = -16.72 + -0.08)
Location | 15,281,588 – 15,281,684 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -16.08 |
Consensus MFE | -8.32 |
Energy contribution | -8.48 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.07 |
Mean z-score | -1.90 |
Structure conservation index | 0.52 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15281588 96 - 20766785 A-AACUUUUCAUGCAU-UGCCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGC------------------AACAAA----GGCAACAACUUAUGAAAACAACAGCGUCAACUGACCC .-...(((((((((((-((.......))))))........((((...........------------------......----)))).......))))))).......(((....))).. ( -16.43) >DroPse_CAF1 112616 73 - 1 A-AACUUUUCAUGCAU-UGUCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGC------------------AACAAA---------------------------GCGUCAACUGACCC .-.........(((((-((((...)))))))))....................((------------------......---------------------------))(((....))).. ( -14.30) >DroSec_CAF1 90932 96 - 1 A-AACUUUUCAUGCAU-UGCCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGC------------------AACAAA----GACAACAACUUAUGAAAACAACAGCGUCAACUGGCCC .-..............-.(((((((((.(.(((.......)))).........((------------------....((----(.......))).((....))...)))))))).))).. ( -13.90) >DroWil_CAF1 171622 102 - 1 AAAGUUUUCCAUGCAUUUGUCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGC------------------AACAAACAGCAGCAGCAACUUAUGAAAACAACAGCGUCAACUGACUG ...((((((..(((((((((..(((.((((.......)).)).))).))))))))------------------).......((....)).......))))))......(((....))).. ( -21.90) >DroAna_CAF1 63665 114 - 1 A-AACUUUUCAUGCAU-UGCCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGCAGCACCCCCACCAGCACCAACAAU----ACCAACAACUUAUGGGAACAAUAGCGUCAACUGACCC .-..............-....((((((.((((........(((..........))))))).((((..((..........----........))..)))).........))))))...... ( -15.67) >DroPer_CAF1 71147 73 - 1 A-AACUUUUCAUGCAU-UGUCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGC------------------AACAAA---------------------------GCGUCAACUGACCC .-.........(((((-((((...)))))))))....................((------------------......---------------------------))(((....))).. ( -14.30) >consensus A_AACUUUUCAUGCAU_UGCCGUUGACAGUGCAAUAAACAUGCCAAAACAAAUGC__________________AACAAA______CAACAACUUAUGAAAACAACAGCGUCAACUGACCC ..................(((((((((.(.(((.......))))....(....)......................................................)))))).))).. ( -8.32 = -8.48 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:20 2006