Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,243,723 – 15,243,818 |
Length | 95 |
Max. P | 0.690991 |
Location | 15,243,723 – 15,243,818 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 82.93 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -25.14 |
Energy contribution | -24.75 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.10 |
Mean z-score | -1.67 |
Structure conservation index | 0.80 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15243723 95 - 20766785 CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGGUAUCCUAACCACUAGACAAUAUGGGAG---CUGUAUUAGAUUAUAGCCAAUAUAU (((((((((...((..(((((((...)))))))..)).)))).....(((.....)))....)))))(.(---(((((......)))))))....... ( -31.80) >DroGri_CAF1 76373 93 - 1 CCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAGAUGUUUGGUCCGCA----GCCAAAUUC- .....(((((.......))))).......((.((.(..(((((((((....(((.((.....)))))..)))))))))..).))----.))......- ( -29.80) >DroEre_CAF1 67376 94 - 1 CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGGUAUCCUAACCACUAGACAAUAUGGGAGGUUGACUUUGAGUU----CCCAAAAUGC .......(((((((.((....((((((((((((....))).(((......)))...........)))))))))....)).))))----)))....... ( -33.80) >DroWil_CAF1 167822 94 - 1 CCAUACCGGGAAUCGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGCUGUUGCGUG----GUCAAAAUGC (((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))((((..((....))..)----)))....... ( -31.60) >DroYak_CAF1 70728 94 - 1 CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGGUAUCCUAACCACUAGACAAUAUGGGAGGUGAUUUCUGUGUU----UCCAAAACAA .(((((((((.......)))))(((((((((((....))).(((......)))...........))))))))......))))..----.......... ( -32.60) >DroAna_CAF1 60804 89 - 1 CCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUGUGAUGUUUGCGCA----GGCAA----- .....(((((.......)))))((((..(((((....)))((((((((...(((.((.....)))))...).))))))).)).)----)))..----- ( -28.60) >consensus CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAGGUGAUUUUUGCGUU____GCCAAAAUA_ (((((((((...((..(((((((...)))))))..)).)))).....(((.....)))....)))))............................... (-25.14 = -24.75 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:16 2006