Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,242,839 – 15,242,939 |
Length | 100 |
Max. P | 0.895929 |
Location | 15,242,839 – 15,242,939 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -28.37 |
Consensus MFE | -25.28 |
Energy contribution | -25.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.89 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15242839 100 + 20766785 ------UUG-CUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGACACAUACCUAUUUAGUCA-AUCUCC----- ------.((-..((((((((((((.......)))))....(((((.(....))))))....((((...))))....)))))))..))..............-......----- ( -26.20) >DroPse_CAF1 109498 106 + 1 ------GUA-CUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGAUAUAGUCAUCAUUGGUCCAAAACUGCAUUU ------(((-.(((((.....)))))........(((((.(((((.(....))))))(((((((..............)))))))...........))))).....))).... ( -27.84) >DroEre_CAF1 66660 109 + 1 AAAAGAUACCUUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGAUACACCAUCUUUUAGUCA-AAACACCA--- (((((((.....((((((((((((.......)))))....(((((.(....))))))....((((...))))....)))))))......))))))).....-........--- ( -30.10) >DroWil_CAF1 166992 106 + 1 ------AUA-CUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGAUAUAUUUGUUCUGGGCACAAUUUGCCAGUU ------(((-..((((((((((((.......)))))....(((((.(....))))))....((((...))))....)))))))..)))........((((.....)))).... ( -31.10) >DroYak_CAF1 69729 100 + 1 ------UUC-CUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGAUAUCCAAGAUUCUGGUCA-AAACAC----- ------(((-.(((((.....)))))..)))....((((.(((.(((....))).(((((((((..............)))))))))..)))....)))).-......----- ( -27.84) >DroPer_CAF1 67537 106 + 1 ------UUA-CUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGAUAUACUUGUCUUUGGUCCAAAACUGCAUUU ------...-.(((((.....)))))........(((((.(((((.(....))))))(((((((..............)))))))...........)))))............ ( -27.14) >consensus ______UUA_CUUCCCAUACCGGGAAUCGAACCCGGGCCUUCUGGGUGAAAGCCAGAUAUCCUAGCCACUAGACCAUAUGGGAUAUACUAGUUUUUGGUCA_AAACACCA___ ............((((((((((((.......)))))....(((((.......)))))....((((...))))....))))))).............................. (-25.28 = -25.28 + 0.00)
Location | 15,242,839 – 15,242,939 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -29.58 |
Energy contribution | -29.58 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.85 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15242839 100 - 20766785 -----GGAGAU-UGACUAAAUAGGUAUGUGUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAG-CAA------ -----......-..............(((.((((((((((((....)))).........(((((((.....)))))))((((.......)))))))))))).)-)).------ ( -32.50) >DroPse_CAF1 109498 106 - 1 AAAUGCAGUUUUGGACCAAUGAUGACUAUAUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAG-UAC------ ...(((....(((((((..........((((((....(((((....)))))))))))(.(((((((.....))))))).))))))))(((((.....))))))-)).------ ( -33.50) >DroEre_CAF1 66660 109 - 1 ---UGGUGUUU-UGACUAAAAGAUGGUGUAUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAAGGUAUCUUUU ---((((....-..))))(((((((.(...((((((((((((....)))).........(((((((.....)))))))((((.......))))))))))))..).))))))). ( -36.00) >DroWil_CAF1 166992 106 - 1 AACUGGCAAAUUGUGCCCAGAACAAAUAUAUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAG-UAU------ ..((((((.....)).)))).....((((.((((((((((((....)))).........(((((((.....)))))))((((.......)))))))))))).)-)))------ ( -36.40) >DroYak_CAF1 69729 100 - 1 -----GUGUUU-UGACCAGAAUCUUGGAUAUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAG-GAA------ -----......-...((.((((((.((((((((....(((((....)))))))))))))(((((((.....))))))).))))))..(((((.....))))))-)..------ ( -36.60) >DroPer_CAF1 67537 106 - 1 AAAUGCAGUUUUGGACCAAAGACAAGUAUAUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAG-UAA------ ...(((....(((((((.......((.((((((....(((((....)))))))))))))(((((((.....)))))))..)))))))(((((.....))))))-)).------ ( -35.00) >consensus ___UGGAGUUU_GGACCAAAAACAAGUAUAUCCCAUAUGGUCUAGUGGCUAGGAUAUCUGGCUUUCACCCAGAAGGCCCGGGUUCGAUUCCCGGUAUGGGAAG_UAA______ ..............................((((((((((((....)))).........(((((((.....)))))))((((.......))))))))))))............ (-29.58 = -29.58 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:12 2006