Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,241,550 – 15,241,665 |
Length | 115 |
Max. P | 0.658394 |
Location | 15,241,550 – 15,241,665 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -45.17 |
Consensus MFE | -34.79 |
Energy contribution | -35.60 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -2.14 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15241550 115 - 20766785 AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUCGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGU--GGGUGGGUG---UUGUUCGC ........((((((((((.........((...(((......)))..))((((((((((((((((..(((........)))..)))))))..)))))))--)))))))))---)))..... ( -44.70) >DroSim_CAF1 61218 117 - 1 AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUCGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGGUGGGGUGGGUG---UUGUUCGC ........((((((((((((..(((.(((..((((.((....)).))))..))).(((((((((..(((........)))..)))))))))....)))..)))))))))---)))..... ( -47.50) >DroEre_CAF1 65169 116 - 1 AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUGGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGU--GGGUGGGUGG--GUGUUCGG ......((.(((((((((.(..((.......((((.((....)).))))((((((((((.((((..(((........)))..)))).))..)))))))--)))..)))))--))))).)) ( -43.20) >DroYak_CAF1 68478 118 - 1 AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUGGGCUCUCGGCUGUGCUUUUGUAAGCUGAAGCCCCAUGU--CGGUGGAUGGGAGUGUUCGG ...((((((..((((((((..((...(((..((((.((....)).))))..))).....(((((.((((((.(((....))))))))))))))...))--.)))))))).)))))).... ( -45.30) >consensus AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUCGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGU__GGGUGGGUG___GUGUUCGC ...((((....((((((((..(((......)))(((((..((((((.(((..........))).)))).))(((((((.(....).))))))))))))...))))))))...)))).... (-34.79 = -35.60 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:08 2006