Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,240,763 – 15,240,860 |
Length | 97 |
Max. P | 0.924549 |
Location | 15,240,763 – 15,240,860 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -35.83 |
Consensus MFE | -30.02 |
Energy contribution | -29.13 |
Covariance contribution | -0.89 |
Combinations/Pair | 1.16 |
Mean z-score | -1.09 |
Structure conservation index | 0.84 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15240763 97 + 20766785 UAUAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUAU--------AGAGUAUUUCG---CAA-GUUC--------GA- ....(((((((((((.((((........)))).))).........(((((.((.....))..)))))))))))))..--------.........(.---...-)...--------..- ( -29.50) >DroVir_CAF1 93529 110 + 1 AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUAU-GGAGAGUACUGA-GGUGG---AAAGCUGUGAUUU---CCA ....(((((((((((.((((........)))).))).........(((((.((.....))..))))))))))))).(-(((((.(((..(-(.(..---..).))))).)))---))) ( -37.30) >DroPse_CAF1 109070 103 + 1 AACUAGCAGAGUGGCGCAGCGGAAGCGCGCUGGGCCCAUAACCCAGAGGUCCGGGGAUCGAAACCUUGUUCUGCUAAUU--GACUGGUGUGGGGUG---CAA-UUCC--------CA- ...((((((((.(((((.((....)))))))((((((........).)))))(((........)))..))))))))...--........(((((..---...-.)))--------))- ( -38.40) >DroGri_CAF1 75892 111 + 1 AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA-------AUUGAGUAGCUUGUGGGUGAUUGUAUACCGCACAA ....(((((((((((.((((........)))).))).........(((((.((.....))..))))))))))))).-------...........((((((((......)))).)))). ( -36.50) >DroMoj_CAF1 91991 107 + 1 AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA-----GAAUACAGUCGGUUG---GAAAAUGAGUUUC---CAA ....(((((((((((.((((........)))).))).........(((((.((.....))..))))))))))))).-----............(((---((((.....))))---))) ( -34.10) >DroPer_CAF1 67118 104 + 1 AACUAGCAGAGUGGCGCAGCGGAAGCGCGCUGGGCCCAUAACCCAGAGGUCCGGGGAUCGAAACCUUGUUCUGCUAAUU--GACUGGUGUGGGGUG---CAA-UUCC--------CAA ...((((((((.(((((.((....)))))))((((((........).)))))(((........)))..))))))))...--........(((((..---...-.)))--------)). ( -39.20) >consensus AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA_____GAAUAGAGUAGGUUG___CAA_UUGC________CAA ....(((((((((((((.((....)))))))((((((........).)))))((((.......))))))))))))........................................... (-30.02 = -29.13 + -0.89)
Location | 15,240,763 – 15,240,860 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -33.42 |
Consensus MFE | -25.30 |
Energy contribution | -25.63 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.76 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15240763 97 - 20766785 -UC--------GAAC-UUG---CGAAAUACUCU--------AUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUAUA -((--------(...-...---)))........--------..(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).... ( -27.90) >DroVir_CAF1 93529 110 - 1 UGG---AAAUCACAGCUUU---CCACC-UCAGUACUCUCC-AUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU (((---(((.......)))---)))..-...........(-(.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))).. ( -31.20) >DroPse_CAF1 109070 103 - 1 -UG--------GGAA-UUG---CACCCCACACCAGUC--AAUUAGCAGAACAAGGUUUCGAUCCCCGGACCUCUGGGUUAUGGGCCCAGCGCGCUUCCGCUGCGCCACUCUGCUAGUU -((--------((..-...---...))))........--((((((((((..............(((((....))))).....(((.(((((......))))).)))..)))))))))) ( -37.20) >DroGri_CAF1 75892 111 - 1 UUGUGCGGUAUACAAUCACCCACAAGCUACUCAAU-------UAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU (((((.(((........)))))))).......(((-------.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).))) ( -34.80) >DroMoj_CAF1 91991 107 - 1 UUG---GAAACUCAUUUUC---CAACCGACUGUAUUC-----UAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU (((---((((.....))))---)))............-----.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).... ( -32.00) >DroPer_CAF1 67118 104 - 1 UUG--------GGAA-UUG---CACCCCACACCAGUC--AAUUAGCAGAACAAGGUUUCGAUCCCCGGACCUCUGGGUUAUGGGCCCAGCGCGCUUCCGCUGCGCCACUCUGCUAGUU .((--------((..-...---...))))........--((((((((((..............(((((....))))).....(((.(((((......))))).)))..)))))))))) ( -37.40) >consensus UUG________GCAA_UUG___CAACCCACACUAGUC_____UAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU ...........................................(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).... (-25.30 = -25.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:05 2006