| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,239,878 – 15,239,986 |
| Length | 108 |
| Max. P | 0.825715 |
| Location | 15,239,878 – 15,239,986 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -28.92 |
| Consensus MFE | -16.13 |
| Energy contribution | -17.27 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.825715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15239878 108 + 20766785 GCAAUUUCAUGGCGCGCUUUUAAGUGGCGCGAAAAUUAAUUGAAAUUUUUGCCAUUUAUAGACAAAUAUGUCAAUUUGAUUGGCAUACAG-GGUUGCUAACUC--CCU-GCG .(((((......((((((.......))))))......))))).......(((((.(((..((((....))))....))).)))))..(((-((.........)--)))-).. ( -30.80) >DroPse_CAF1 108039 96 + 1 GCACAUUCGAAGCGCUCUUUUAAGUGGCGCGAAAAUUAAUUAAAAUUUUUGAAAUUGAUUGACAAAUAUGUCAGUUUGAUUGGCA--------------ACUC--UCAGGCG ......((((.(((((((....)).)))))(((((((......)))))))....)))).(((((....)))))((((((..(...--------------.)..--)))))). ( -23.10) >DroSim_CAF1 58862 108 + 1 GCAAUUUCAUGGCGCGCUUUUAAGUGGCGCGAAAAUUAAUUAAAAUUUUUGCCAUUUAUUGACAAAUAUGUCAAUUUGAUUGGCAUACAG-GGUUGGUAGCUC--CCU-GCG .((((...((((((((((.......)))))(((((((......))))))))))))..)))).....(((((((((...)))))))))(((-((.........)--)))-).. ( -32.70) >DroEre_CAF1 63271 108 + 1 GCAAUUUCCUGGCGCGCUUUUAAGUGGCGCGAAAAUUAAUUAAAAUUUUUGCCAUUUAUUGACAAAUAUGUCAAUUUGAUUGGCAUACAG-GGUUGGUAACUU--CCA-ACG .......((((.((((((.......))))))..................(((((...(((((((....))))))).....)))))..)))-)(((((......--)))-)). ( -35.70) >DroAna_CAF1 58606 111 + 1 GCAAUUUCAUUGCAUGCUUUUAAGUGGCGCGAAAAUUAAUUAAAAUUUUUGCAAUUUAUUGACAAAUAUGUCAAUUUGAUUGGCAGUGGGAGGAAAGUAACACUCUCU-UCA ......(((((((..(((.......)))(((((((((......)))))))))((((.(((((((....)))))))..)))).)))))))(((((.((.....)).)))-)). ( -30.80) >DroPer_CAF1 66086 96 + 1 GCACACUCGAAGCGCUCUUUUAAGUGGCGCGAAAAUUAAUUAAAAUUUUUGAAAUUGAUUGACAAAUAUGUCAGUUUGAUUGGCA--------------ACUC--UCUGGCG ((.((.((((.(((((((....)).)))))(((((((......))))))).......(((((((....))))))))))).)))).--------------....--....... ( -20.40) >consensus GCAAUUUCAUGGCGCGCUUUUAAGUGGCGCGAAAAUUAAUUAAAAUUUUUGCAAUUUAUUGACAAAUAUGUCAAUUUGAUUGGCAUACAG_GGUUGGUAACUC__CCU_GCG ((....((((((((((((.......)))))(((((((......))))))))))))..(((((((....)))))))..))...))............................ (-16.13 = -17.27 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:01 2006