Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,228,456 – 15,228,571 |
Length | 115 |
Max. P | 0.524508 |
Location | 15,228,456 – 15,228,571 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -28.35 |
Consensus MFE | -21.54 |
Energy contribution | -22.10 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.40 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15228456 115 + 20766785 AUACAAAAUUUGAUGCUAAAGAAGACUCUCUUCAAAGCAAGUGUUUUUAUCACUGCUUACUGGAAGUGAAAGGUGUUAUUGCAAAUGAUGCGAUCAGUUCGGAGCAACCGAGGAA .........(((((((....((((.....))))...((((.....(((.(((((.((....)).))))).))).....)))).......)).)))))(((((.....)))))... ( -23.90) >DroSim_CAF1 54787 115 + 1 AUACCAAAUUAGAUGAUAAAGAUGACUCUCUUCAAAGCAAGUGUUUUUAUCACUGCUUACUGGAAGUGAAAGGUGUCAUUGCAAAUGAUGCGAUCAGUUCCGAGCAACCGAGGAA ...((........((((((((((.(((..((....))..))))))))))))).(((((...((((.(((...(((((((.....)))))))..))).))))))))).....)).. ( -29.30) >DroEre_CAF1 59182 115 + 1 AUACCAUAUUUGAUCCUAAAGAUAGCUCACUUCAAAGCAAGUGCUUUUACCACUGCUUACUGGAACUGAAAGGUGUUAUUGCAAAUGACACGAUCACUUCGGUCGAGCCGAGGAA ..........(((((...........(((.(((.(((((.(((.......))))))))....))).)))...(((((((.....))))))))))))((((((.....)))))).. ( -29.50) >DroYak_CAF1 61588 115 + 1 AUAGCAAGUUAGAUGCUGAAGAUAGCUCACUUCAAAGCAAGUGUUUCUAUCAUUGCUUACUGGAAGUGAAAGGUGUUAUUGCCAAUGAUGCAAUCACUUCGGUCCAAUCGAGGAA .(((((.......)))))..(((.(((((((((.((((((.((.......))))))))....)))))))..(((......)))......)).))).(((((((...))))))).. ( -30.70) >consensus AUACCAAAUUAGAUGCUAAAGAUAACUCACUUCAAAGCAAGUGUUUUUAUCACUGCUUACUGGAAGUGAAAGGUGUUAUUGCAAAUGAUGCGAUCACUUCGGACCAACCGAGGAA ...........(((............(((((((.(((((.(((.......))))))))....)))))))...(((((((.....))))))).))).((((((.....)))))).. (-21.54 = -22.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:00 2006