| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,655,655 – 2,655,748 |
| Length | 93 |
| Max. P | 0.508334 |
| Location | 2,655,655 – 2,655,748 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.92 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -16.66 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2655655 93 + 20766785 UAUUUAAGGCACACUUAUAAUGUCAAAUAAUUGAUAUGGAAUUUGGGAAACUUUUGAUUUGAGUGUCCAUUCAGAGUGUGGCACGUUGACAAG .......(.(((((((...(((((((....))))))).((((...(((.((((.......)))).))))))).))))))).)........... ( -22.90) >DroSec_CAF1 88903 93 + 1 UAUUCAAAGCACACUUGUCACGUCAAAUAAUUGAUAUGGAAUUUGGGAAACUUUUGAUUUGAGUGUCCAUUCAGAGUGUGGCACGUUGACAAG .............(((((((((((((....))))).(.(((((.((....))...))))).)((((((((.....))).)))))).))))))) ( -22.70) >DroSim_CAF1 86580 93 + 1 UAUUCAAAGCACACUUGUCAUGUCAAAUAAUUGAUAUGGAAUUUGGAAAACUUUUGAUUUGAGUGUCCAUUCAGAGUGUGGCACGUUGACAAG ...((((.((((((((..((((((((....))))))))(((..((((..((((.......)))).))))))).)))))).))...)))).... ( -24.20) >DroEre_CAF1 87245 93 + 1 UGGGACAAGCACACAUGCCAAGUGAAAUAGUUGACGUGGAAUUUGGGAAACUUUGGACUUGAGUGUGCAUCCGGAGUGUGGCAAGUUGACAGG ((.(((..((.(((((.((..((.((....)).))..(((....((....)).((.((......)).))))))).)))))))..)))..)).. ( -20.70) >consensus UAUUCAAAGCACACUUGUCAUGUCAAAUAAUUGAUAUGGAAUUUGGGAAACUUUUGAUUUGAGUGUCCAUUCAGAGUGUGGCACGUUGACAAG .........(((((((.(((((((((....)))))))))....((((..((((.......)))).))))....)))))))............. (-16.66 = -17.60 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:19 2006