Locus 4659

Sequence ID 2R_DroMel_CAF1
Location 15,209,964 – 15,210,065
Length 101
Max. P 0.842274
window7492

overview

Window 2

Location 15,209,964 – 15,210,065
Length 101
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -25.32
Consensus MFE -16.94
Energy contribution -16.58
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.79
Structure conservation index 0.67
SVM decision value 0.76
SVM RNA-class probability 0.842274
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15209964 101 + 20766785
CA-CCCCG----UUCUGCAUUUCCUUCAU-------AUGGGUGCAUGCAAAGUGCCAGAAAAACAUUUACCAUUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGCUGA
..-.....----.((.((((((.....((-------(((((..(.......)..)).................((((((((.......)))))).)))))))..)))))).)) ( -22.10)
>DroPse_CAF1 73825 93 + 1
GAGCCCGG----AUCCGAC---------U-------CUGGGUGCAUGCAAUGUGCCAGAAAAACAGUUGCCACUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGCUAA
..((((((----(......---------)-------))))))((((...(((((.........((((....))))((((((.......)))))).)))))......))))... ( -28.90)
>DroEre_CAF1 40553 101 + 1
CA-CCCCA----UUCUGCAUUUCCCUCAU-------ACGGGUGCAUGCAAAGUGCCAGAAAAACAUUUACCACUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGCUGA
..-...((----((.(((((..(((....-------..)))...))))).)))).(((.......(((((...((((((((.......)))))).))...)))))....))). ( -25.20)
>DroWil_CAF1 101332 112 + 1
AA-CCCUGCAAAUUCUGCAAUUGCUGCAACUCGACGCUGGGCGCAUGCAAAGUGCCAGAAAAACAUUUGCCAUUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGUUGA
..-.........(((((((.(((((((..((((....)))).))).))))..)).))))).(((((((..(((((((((((.......)))))).)).)))...))))))).. ( -30.10)
>DroAna_CAF1 35419 87 + 1
------------UGCUAAAG-UCC-------------UGGGUGCAUGCAAAGUGCCAGAAAAACAUUUGCCAUUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGCUGA
------------.((.....-..(-------------((.(..(.......)..)))).......(((((...((((((((.......)))))).))...)))))...))... ( -18.60)
>DroPer_CAF1 44777 93 + 1
GAGCCCGG----AUCCGAC---------U-------CUGGGUGCAUGCAAAGUGCCAGAAAAACAGUUGCCACUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGCUGA
..((((((----(......---------)-------))))))(((((...((((.(((........))).)))).((((((.......))))))...)))))........... ( -27.00)
>consensus
CA_CCCCG____UUCUGAA__UCC____U_______CUGGGUGCAUGCAAAGUGCCAGAAAAACAUUUGCCACUGCCGCAUAUUUCAAAUGCGGACACAUGUAAAAAUGCUGA
.......................................(((((.......)))))..........((((...((((((((.......)))))).))...))))......... (-16.94 = -16.58 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:57 2006