| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,207,278 – 15,207,377 |
| Length | 99 |
| Max. P | 0.689867 |
| Location | 15,207,278 – 15,207,377 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -11.76 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15207278 99 + 20766785 UCUCAGGUGCUACUAAACCAGAAAUACAAAAAUAUUACUUAAUAUAAAA-GUCCGUAUAUAUAUAUGGAA----------AUUUCUUGGAAGUAUAUUAUGACAUGCCUU ..(((.(((((.(((....((((((......(((((....)))))....-.(((((((....))))))).----------))))))))).)))))....)))........ ( -15.90) >DroSim_CAF1 33815 89 + 1 UCUCAGGUGCUACUAAACCAGAAAUACAAGAAUAUUAUUUGAUAUAGAA-UUCCGU--UUGUAUAUGGAA----------AUUUCUUGGAAGUAUA--------UGCCAU .....(((..((((...((((((((......(((((....)))))....-((((((--......))))))----------))))).))).))))..--------.))).. ( -16.70) >DroEre_CAF1 37867 106 + 1 UCUCAGGUGCUGCCAAACAAGAAAUAAAACAAUUUUAUUUAUUAAACAAAUUCCGUAUAUGUAUAUGGAAAAUAUCUAGAAUUUCUAGGGAGUAUAC----AUAUAUAUU ......(((((.((.......(((((((.....)))))))..........((((((((....)))))))).....((((.....)))))))))))..----......... ( -18.20) >consensus UCUCAGGUGCUACUAAACCAGAAAUACAAAAAUAUUAUUUAAUAUAAAA_UUCCGUAUAUGUAUAUGGAA__________AUUUCUUGGAAGUAUA_____A_AUGCCUU ......(((((.(((....((((((.......(((........))).....(((((((....)))))))...........))))))))).)))))............... (-11.76 = -12.10 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:55 2006